Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05505

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,187,315	+		LRK54_RS05495	0.15	-2.0
1,187,315	+		LRK54_RS05495	0.15	+1.7
1,187,316	-		LRK54_RS05495	0.16	-1.8
1,187,316	-		LRK54_RS05495	0.16	-2.1
1,187,316	-		LRK54_RS05495	0.16	-0.9
1,187,358	-		LRK54_RS05495	0.34	-2.1
1,187,358	-		LRK54_RS05495	0.34	-2.0
1,187,449	-		LRK54_RS05495	0.74	-1.7
1,187,449	-		LRK54_RS05495	0.74	-1.1
1,187,449	-		LRK54_RS05495	0.74	+0.1
1,187,449	-		LRK54_RS05495	0.74	-1.6
1,187,479	+		LRK54_RS05495	0.87	-2.7
1,187,479	+		LRK54_RS05495	0.87	-0.6
1,187,479	+		LRK54_RS05495	0.87	-3.0
1,187,479	+		LRK54_RS05495	0.87	-2.3
1,187,479	+		LRK54_RS05495	0.87	-0.3
1,187,479	+		LRK54_RS05495	0.87	-0.3
1,187,480	-		LRK54_RS05495	0.88	-1.3
1,187,480	-		LRK54_RS05495	0.88	-1.8
1,187,480	-		LRK54_RS05495	0.88	-0.2
1,187,480	-		LRK54_RS05495	0.88	-2.4
1,187,481	-		LRK54_RS05495	0.88	+0.7
1,187,508	-				-1.5
1,187,508	-				-2.1
1,187,540	+				-3.9
1,187,540	+				-0.6
1,187,541	-				+0.1
1,187,664	-		LRK54_RS05500	0.25	+0.7
1,187,726	-		LRK54_RS05500	0.39	+0.3
1,188,149	+				+0.2
1,188,149	+				-0.3
1,188,149	+				-1.3
1,188,150	-				-0.9
1,188,150	-				-0.5
1,188,302	+		LRK54_RS05505	0.46	-2.1
1,188,302	+		LRK54_RS05505	0.46	-2.2
1,188,302	+		LRK54_RS05505	0.46	-0.6
1,188,302	+		LRK54_RS05505	0.46	-1.2
1,188,302	+		LRK54_RS05505	0.46	+1.1
1,188,302	+		LRK54_RS05505	0.46	+0.1
1,188,302	+		LRK54_RS05505	0.46	+0.1
1,188,302	+		LRK54_RS05505	0.46	-0.1
1,188,302	+		LRK54_RS05505	0.46	-0.9
1,188,302	+		LRK54_RS05505	0.46	-0.7
1,188,302	+		LRK54_RS05505	0.46	-1.4
1,188,302	+		LRK54_RS05505	0.46	-1.0
1,188,302	+		LRK54_RS05505	0.46	+0.1
1,188,302	+		LRK54_RS05505	0.46	-1.6
1,188,302	+		LRK54_RS05505	0.46	-1.3
1,188,302	+		LRK54_RS05505	0.46	-0.2
1,188,302	+		LRK54_RS05505	0.46	-1.1
1,188,302	+		LRK54_RS05505	0.46	-1.6
1,188,303	-		LRK54_RS05505	0.47	-0.9
1,188,303	-		LRK54_RS05505	0.47	-1.2
1,188,303	-		LRK54_RS05505	0.47	-1.5
1,188,303	-		LRK54_RS05505	0.47	-0.5
1,188,303	-		LRK54_RS05505	0.47	-1.8
1,188,303	-		LRK54_RS05505	0.47	-0.1
1,188,303	-		LRK54_RS05505	0.47	+0.1
1,188,303	-		LRK54_RS05505	0.47	-1.0
1,188,303	-		LRK54_RS05505	0.47	-0.5
1,188,303	-		LRK54_RS05505	0.47	+0.9
1,188,303	-		LRK54_RS05505	0.47	-0.5
1,188,303	-		LRK54_RS05505	0.47	-1.1
1,188,303	-		LRK54_RS05505	0.47	-1.5
1,188,303	-		LRK54_RS05505	0.47	+0.3
1,188,303	-		LRK54_RS05505	0.47	-1.3
1,188,303	-		LRK54_RS05505	0.47	-0.3
1,188,303	-		LRK54_RS05505	0.47	+0.7
1,188,303	-		LRK54_RS05505	0.47	-0.6
1,188,389	+		LRK54_RS05505	0.68	-0.3
1,188,389	+		LRK54_RS05505	0.68	+0.2
1,188,389	+		LRK54_RS05505	0.68	-2.5
1,188,389	+		LRK54_RS05505	0.68	-1.3
1,188,390	-		LRK54_RS05505	0.69	-1.3
1,188,390	-		LRK54_RS05505	0.69	-1.0
1,188,390	-		LRK54_RS05505	0.69	-1.8
1,188,390	-		LRK54_RS05505	0.69	-1.0
1,188,390	-		LRK54_RS05505	0.69	+0.2
1,188,390	-		LRK54_RS05505	0.69	-0.6
1,188,547	-				+0.8
1,188,561	+				-1.2
1,188,561	+				-1.2
1,188,562	-				+0.6
1,188,562	-				+0.1
1,188,562	-				+0.5
1,188,645	+				-2.1
1,188,645	+				-1.1
1,188,645	+				+0.2
1,188,646	-				-0.3
1,188,646	-				-1.3
1,188,716	+		LRK54_RS05510	0.10	-1.8
1,188,716	+		LRK54_RS05510	0.10	-2.6
1,188,716	+		LRK54_RS05510	0.10	-0.8
1,188,716	+		LRK54_RS05510	0.10	-0.9
1,188,716	+		LRK54_RS05510	0.10	-0.2
1,188,717	-		LRK54_RS05510	0.10	+1.7
1,188,717	-		LRK54_RS05510	0.10	-1.3
1,188,984	+		LRK54_RS05510	0.34	-0.3
1,188,984	+		LRK54_RS05510	0.34	-0.3
1,188,984	+		LRK54_RS05510	0.34	+0.3
1,188,984	+		LRK54_RS05510	0.34	-0.2
1,188,985	-		LRK54_RS05510	0.35	-0.4
1,188,985	-		LRK54_RS05510	0.35	+0.1
1,189,125	+		LRK54_RS05510	0.47	-1.4
1,189,125	+		LRK54_RS05510	0.47	-0.9
1,189,125	+		LRK54_RS05510	0.47	-0.8
1,189,126	-		LRK54_RS05510	0.47	+0.3
1,189,126	-		LRK54_RS05510	0.47	-0.3
1,189,398	+		LRK54_RS05510	0.72	-0.3
1,189,398	+		LRK54_RS05510	0.72	+1.1
1,189,398	+		LRK54_RS05510	0.72	-1.8
1,189,398	+		LRK54_RS05510	0.72	+0.7
1,189,398	+		LRK54_RS05510	0.72	-1.5
1,189,398	+		LRK54_RS05510	0.72	-1.1
1,189,398	+		LRK54_RS05510	0.72	-2.1
1,189,398	+		LRK54_RS05510	0.72	-2.8
1,189,399	-		LRK54_RS05510	0.72	+2.7
1,189,399	-		LRK54_RS05510	0.72	-1.8
1,189,399	-		LRK54_RS05510	0.72	-0.9
1,189,399	-		LRK54_RS05510	0.72	-1.0
1,189,399	-		LRK54_RS05510	0.72	-1.3
1,189,399	-		LRK54_RS05510	0.72	+1.1
1,189,399	-		LRK54_RS05510	0.72	-0.2
1,189,399	-		LRK54_RS05510	0.72	-0.6
1,189,399	-		LRK54_RS05510	0.72	-0.3
1,189,399	-		LRK54_RS05510	0.72	+0.5
1,189,399	-		LRK54_RS05510	0.72	-1.0
1,189,399	-		LRK54_RS05510	0.72	+0.3
1,189,399	-		LRK54_RS05510	0.72	-0.6
1,189,399	-		LRK54_RS05510	0.72	-0.6
1,189,399	-		LRK54_RS05510	0.72	+0.6
1,189,399	-		LRK54_RS05510	0.72	-1.1
1,189,399	-		LRK54_RS05510	0.72	-1.4
1,189,399	-		LRK54_RS05510	0.72	+0.3
1,189,399	-		LRK54_RS05510	0.72	-1.5
1,189,399	-		LRK54_RS05510	0.72	+0.1
1,189,401	+		LRK54_RS05510	0.72	+0.1
1,189,401	+		LRK54_RS05510	0.72	-1.6
1,189,401	+		LRK54_RS05510	0.72	+0.1
1,189,401	+		LRK54_RS05510	0.72	-0.6
1,189,401	+		LRK54_RS05510	0.72	-0.9
1,189,401	+		LRK54_RS05510	0.72	-2.1
1,189,401	+		LRK54_RS05510	0.72	+0.3
1,189,401	+		LRK54_RS05510	0.72	+0.4
1,189,401	+		LRK54_RS05510	0.72	-0.1
1,189,401	+		LRK54_RS05510	0.72	-2.3
1,189,401	+		LRK54_RS05510	0.72	+0.7
1,189,401	+		LRK54_RS05510	0.72	-0.6
1,189,402	-		LRK54_RS05510	0.72	-2.8
1,189,402	-		LRK54_RS05510	0.72	-0.9
1,189,402	-		LRK54_RS05510	0.72	-0.5
1,189,402	-		LRK54_RS05510	0.72	+0.3
1,189,402	-		LRK54_RS05510	0.72	-0.7
1,189,402	-		LRK54_RS05510	0.72	-0.0
1,189,402	-		LRK54_RS05510	0.72	-1.6
1,189,402	-		LRK54_RS05510	0.72	-0.4
1,189,402	-		LRK54_RS05510	0.72	-2.2
1,189,402	-		LRK54_RS05510	0.72	+1.0
1,189,452	+		LRK54_RS05510	0.77	+1.3
1,189,452	+		LRK54_RS05510	0.77	+0.3
1,189,452	+		LRK54_RS05510	0.77	-0.4
1,189,452	+		LRK54_RS05510	0.77	-2.6
1,189,452	+		LRK54_RS05510	0.77	-1.5
1,189,452	+		LRK54_RS05510	0.77	+0.4
1,189,452	+		LRK54_RS05510	0.77	+0.7
1,189,452	+		LRK54_RS05510	0.77	-0.3
1,189,453	-		LRK54_RS05510	0.77	-1.4
1,189,453	-		LRK54_RS05510	0.77	-0.1
1,189,453	-		LRK54_RS05510	0.77	-0.7
1,189,453	-		LRK54_RS05510	0.77	-2.5
1,189,453	-		LRK54_RS05510	0.77	+0.4
1,189,453	-		LRK54_RS05510	0.77	+0.4
1,189,453	-		LRK54_RS05510	0.77	+0.7
1,189,453	-		LRK54_RS05510	0.77	+1.2
1,189,453	-		LRK54_RS05510	0.77	+0.6
1,189,453	-		LRK54_RS05510	0.77	-1.2
1,189,453	-		LRK54_RS05510	0.77	-0.5
1,189,453	-		LRK54_RS05510	0.77	+0.1