Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4699

Experiment: Doxycycline hyclate 0.000025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.000025 mg/ml
1,531	+				+0.5
1,532	-				+0.0
1,532	-				-0.6
1,552	+				-0.8
1,552	+				+0.2
1,553	-				+0.4
1,553	-				-2.0
1,569	+				-0.7
1,569	+				+0.0
1,569	+				+0.1
1,569	+				+0.3
1,570	-				-0.3
1,570	-				-0.8
1,570	-				-0.3
1,570	-				+0.2
1,570	-				+0.2
1,570	-				+0.3
1,570	-				+0.1
1,570	-				+0.2
1,631	+				+0.5
1,631	+				-0.1
1,631	+				-0.5
1,631	+				+0.8
1,631	+				+1.5
1,632	-				+1.1
1,632	-				+1.5
1,677	+				-0.8
1,677	+				+0.2
1,677	+				+0.3
1,677	+				+0.2
1,677	+				+0.5
1,678	-				+0.1
1,678	-				+1.0
1,678	-				-0.6
1,681	-				-0.0
1,681	-				+0.1
1,734	+				-0.3
1,751	-				-0.1
1,773	-				-0.5
1,813	+				-1.5
1,824	-				-0.2
1,828	+				+0.4
1,848	-				-0.8
1,866	+				+0.8
1,895	+				+0.1
1,896	-				-0.9
1,908	+				+0.8
1,908	+				+0.0
1,909	-				-0.7
1,909	-				+0.5
1,909	-				-0.5
1,945	+				+0.2
1,945	+				-1.3
1,945	+				+0.2
1,946	-				-0.3
1,946	-				+0.8
1,946	-				+0.4
1,946	-				+0.1
1,953	-				-0.4
1,965	+				-1.0
1,965	+				+0.7
1,965	+				-1.5
1,965	+				+1.5
1,965	+				+0.2
1,965	+				+0.5
1,965	+				-0.8
1,966	-				-1.0
1,966	-				-0.9
1,966	-				-0.8
1,966	-				-0.9
1,966	-				-0.4
1,966	-				-1.1
1,966	-				-0.7
1,966	-				+0.5
1,968	+				+0.4
1,968	+				-0.2
1,968	+				+0.4
1,968	+				-0.3
1,968	+				+0.4
1,968	+				+0.6
1,968	+				+0.2
1,968	+				+0.5
1,968	+				-0.3
1,968	+				+1.2
1,969	-				+0.7
1,969	-				+0.6
1,969	-				-1.6
1,969	-				-0.2
1,969	-				-0.5
1,969	-				-0.4
1,969	-				+0.0
1,969	-				-1.7
1,969	-				+0.2
2,010	+				+0.0
2,049	+				+0.4
2,050	-				-0.2
2,050	-				+0.5
2,078	-				+0.6
2,078	-				+0.3
2,078	-				+0.3
2,093	+				+0.7
2,093	+				-1.2
2,093	+				+1.0
2,094	-				+1.8
2,094	-				-0.5
2,094	-				-0.4
2,094	-				+0.7
2,108	-				+1.0
2,108	-				+0.4
2,108	-				-1.3
2,128	+				-0.2
2,128	+				+1.2
2,129	-				+0.2
2,129	-				-1.0
2,129	-				+0.2
2,129	-				+0.5
2,132	+				+0.4
2,132	+				+0.5
2,132	+				+1.0
2,132	+				+1.2
2,132	+				+0.2
2,132	+				-0.3
2,133	-				+0.3
2,133	-				+1.3
2,133	-				+0.1
2,133	-				-1.0
2,133	-				+1.5
2,133	-				-0.9
2,133	-				+1.0
2,172	+				+0.6
2,173	-				+0.3
2,173	-				-0.1
2,179	-				-0.7
2,185	-				+0.1
2,185	-				+1.4
2,195	+				+1.3
2,196	-				+0.3
2,196	-				+0.8
2,235	+				+0.4
2,236	-				-0.2
2,236	-				-0.3
2,253	+				+0.6
2,254	-				+0.7
2,257	+				+0.3
2,258	-				+0.3
2,258	-				+0.4
2,258	-				+0.1
2,267	+				-0.4
2,267	+				+0.8
2,267	+				-0.4
2,269	+				-0.0
2,276	+				-0.8
2,276	+				-0.4
2,276	+				-0.2
2,276	+				+1.4
2,276	+				-0.8
2,276	+				-0.2
2,276	+				-0.0
2,276	+				+0.0
2,276	+				-0.6
2,277	-				+0.9
2,277	-				-0.1
2,277	-				+0.7
2,314	+				+0.6
2,377	+				+0.1
2,377	+				+0.7
2,378	-				-0.4
2,378	-				-0.5
2,378	-				-0.2
2,378	-				+1.1
2,378	-				-0.1
2,378	-				-0.6
2,378	-				-0.0
2,458	+				+0.0
2,458	+				-1.2
2,458	+				+1.0
2,458	+				+0.4
2,458	+				-0.1
2,458	+				-1.5
2,459	-				-0.1
2,459	-				+0.6
2,459	-				+0.5
2,459	-				-0.2
2,459	-				+0.3
2,459	-				-0.8
2,459	-				+0.7
2,459	-				-1.2
2,459	-				-0.2
2,459	-				-0.9
2,460	+				-0.5
2,460	+				+1.6
2,460	+				+0.0
2,460	+				+0.4
2,460	+				+0.4
2,460	+				+0.6
2,460	+				-0.1
2,460	+				+0.5
2,460	+				+1.0
2,461	-				+0.3
2,461	-				+0.3
2,461	-				+1.2
2,461	-				+0.1
2,461	-				-0.1
2,511	+				-0.7
2,511	+				+0.6
2,511	+				+0.2
2,511	+				+0.1
2,512	-				+1.9
2,512	-				+0.6
2,523	+				+0.1
2,523	+				-0.8
2,523	+				+0.1
2,523	+				-0.1
2,523	+				+0.6
2,523	+				+0.9
2,523	+				-1.3
2,523	+				+1.0
2,524	-				+1.2
2,524	-				-1.0
2,524	-				+1.1
2,528	+				-0.2
2,528	+				-0.0
2,528	+				+0.0
2,528	+				+0.3
2,528	+				-1.5
2,528	+				-2.6
2,529	-				-0.3
2,529	-				-1.2
2,529	-				+0.8
2,529	-				+0.6
2,740	+		Ac3H11_4699	0.63	+0.8
2,741	-		Ac3H11_4699	0.63	+1.2
2,860	+				+0.1
2,861	-				-0.5
2,930	-				-0.2
3,123	+				+0.9
3,123	+				-0.1
3,123	+				+0.2
3,124	-				+0.9
3,124	-				+0.2
3,124	-				-0.2
3,124	-				-0.6
3,124	-				+0.8
3,132	+				+1.3
3,132	+				+1.3
3,132	+				+1.0
3,132	+				+0.0
3,132	+				+0.9
3,132	+				+1.3
3,132	+				+0.4
3,132	+				-0.3
3,132	+				+1.2
3,132	+				+1.3
3,132	+				+0.7
3,132	+				+0.7
3,132	+				+1.1
3,132	+				+1.0
3,132	+				+0.5
3,132	+				-0.5
3,132	+				+0.5
3,132	+				-0.3
3,132	+				+0.1
3,132	+				+0.7
3,132	+				+0.3
3,133	-				+0.9
3,133	-				+0.5
3,133	-				+1.0
3,133	-				+0.3
3,133	-				+0.8
3,133	-				+0.8
3,133	-				+0.3
3,133	-				-0.2
3,133	-				+0.4
3,133	-				+0.9
3,133	-				+0.2
3,133	-				+0.3