Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4698

Experiment: Doxycycline hyclate 0.000025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Doxycycline hyclate 0.000025 mg/ml
136	+				-0.3
136	+				-0.2
136	+				-1.0
229	+				+0.8
229	+				-0.3
229	+				+0.2
230	-				-1.7
230	-				+1.2
230	-				+0.2
230	-				-0.1
433	+		Ac3H11_4698	0.23	-0.9
490	-		Ac3H11_4698	0.30	+0.5
490	-		Ac3H11_4698	0.30	+0.1
490	-		Ac3H11_4698	0.30	-0.0
490	-		Ac3H11_4698	0.30	+0.9
490	-		Ac3H11_4698	0.30	+0.3
490	-		Ac3H11_4698	0.30	+1.5
490	-		Ac3H11_4698	0.30	-0.3
490	-		Ac3H11_4698	0.30	-0.4
490	-		Ac3H11_4698	0.30	-0.1
490	-		Ac3H11_4698	0.30	+0.0
490	-		Ac3H11_4698	0.30	+0.4
618	+		Ac3H11_4698	0.45	+0.8
618	+		Ac3H11_4698	0.45	+0.3
618	+		Ac3H11_4698	0.45	-0.2
618	+		Ac3H11_4698	0.45	-0.9
618	+		Ac3H11_4698	0.45	+2.8
618	+		Ac3H11_4698	0.45	+0.5
618	+		Ac3H11_4698	0.45	-0.3
619	-		Ac3H11_4698	0.45	+1.0
619	-		Ac3H11_4698	0.45	-1.1
619	-		Ac3H11_4698	0.45	+1.0
864	+		Ac3H11_4698	0.75	+0.5
864	+		Ac3H11_4698	0.75	-0.7
864	+		Ac3H11_4698	0.75	+0.5
865	-		Ac3H11_4698	0.75	-1.3
865	-		Ac3H11_4698	0.75	+0.3
865	-		Ac3H11_4698	0.75	-0.7
865	-		Ac3H11_4698	0.75	-0.0
865	-		Ac3H11_4698	0.75	-0.5
1,053	+				+0.6
1,054	-				-0.8
1,054	-				-0.5
1,088	+				-0.5
1,088	+				-0.3
1,088	+				-0.3
1,088	+				+0.5
1,089	-				+0.3
1,089	-				-0.7
1,089	-				+0.5
1,102	+				+0.5
1,103	-				+0.4
1,103	-				+0.5
1,103	-				+0.4
1,103	-				+0.9
1,103	-				+0.3
1,103	-				-0.9
1,103	-				-0.3
1,123	+				-0.1
1,123	+				+0.1
1,123	+				-0.1
1,269	+				-0.1
1,269	+				+1.1
1,304	+				+2.5
1,304	+				-0.2
1,304	+				-1.5
1,372	+				-0.9
1,372	+				-0.9
1,373	-				-0.5
1,373	-				-0.9
1,407	-				-3.2
1,449	+				-0.4
1,449	+				+0.4
1,449	+				+0.3
1,450	-				-0.4
1,450	-				+0.3
1,450	-				+0.0
1,452	+				-0.7
1,452	+				-1.3
1,452	+				-0.5
1,452	+				-0.4
1,452	+				-0.4
1,453	-				-0.2
1,453	-				-0.6
1,453	-				+0.6
1,490	-				-1.4
1,531	+				+0.5
1,532	-				+0.0
1,532	-				-0.6
1,552	+				-0.8
1,552	+				+0.2
1,553	-				+0.4
1,553	-				-2.0
1,569	+				-0.7
1,569	+				+0.0
1,569	+				+0.1
1,569	+				+0.3
1,570	-				-0.3
1,570	-				-0.8
1,570	-				-0.3
1,570	-				+0.2
1,570	-				+0.2
1,570	-				+0.3
1,570	-				+0.1
1,570	-				+0.2
1,631	+				+0.5
1,631	+				-0.1
1,631	+				-0.5
1,631	+				+0.8
1,631	+				+1.5
1,632	-				+1.1
1,632	-				+1.5
1,677	+				-0.8
1,677	+				+0.2
1,677	+				+0.3
1,677	+				+0.2
1,677	+				+0.5
1,678	-				+0.1
1,678	-				+1.0
1,678	-				-0.6
1,681	-				-0.0
1,681	-				+0.1
1,734	+				-0.3
1,751	-				-0.1
1,773	-				-0.5
1,813	+				-1.5
1,824	-				-0.2
1,828	+				+0.4
1,848	-				-0.8
1,866	+				+0.8
1,895	+				+0.1
1,896	-				-0.9
1,908	+				+0.8
1,908	+				+0.0
1,909	-				-0.7
1,909	-				+0.5
1,909	-				-0.5
1,945	+				+0.2
1,945	+				-1.3
1,945	+				+0.2
1,946	-				-0.3
1,946	-				+0.8
1,946	-				+0.4
1,946	-				+0.1
1,953	-				-0.4
1,965	+				-1.0
1,965	+				+0.7
1,965	+				-1.5
1,965	+				+1.5
1,965	+				+0.2
1,965	+				+0.5
1,965	+				-0.8
1,966	-				-1.0
1,966	-				-0.9
1,966	-				-0.8
1,966	-				-0.9
1,966	-				-0.4
1,966	-				-1.1
1,966	-				-0.7
1,966	-				+0.5
1,968	+				+0.4
1,968	+				-0.2
1,968	+				+0.4
1,968	+				-0.3
1,968	+				+0.4
1,968	+				+0.6
1,968	+				+0.2
1,968	+				+0.5
1,968	+				-0.3
1,968	+				+1.2
1,969	-				+0.7
1,969	-				+0.6
1,969	-				-1.6
1,969	-				-0.2
1,969	-				-0.5
1,969	-				-0.4
1,969	-				+0.0
1,969	-				-1.7
1,969	-				+0.2
2,010	+				+0.0
2,049	+				+0.4
2,050	-				-0.2
2,050	-				+0.5