Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_388

Experiment: Doxycycline hyclate 0.000025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_387 and Ac3H11_388 are separated by 122 nucleotidesAc3H11_388 and Ac3H11_389 are separated by 24 nucleotides Ac3H11_387 - ABC transporter ATP-binding protein, at 67,186 to 68,847 _387 Ac3H11_388 - Thymidine phosphorylase (EC 2.4.2.4), at 68,970 to 71,456 _388 Ac3H11_389 - TRAP transporter solute receptor, TAXI family, at 71,481 to 72,848 _389 Position (kb) 68 69 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2 3at 68.845 kb on + strandat 68.845 kb on + strandat 68.856 kb on + strandat 68.895 kb on + strandat 68.895 kb on + strandat 68.961 kb on - strandat 69.117 kb on + strandat 69.117 kb on + strandat 69.118 kb on - strandat 69.118 kb on - strandat 69.153 kb on + strandat 69.348 kb on - strand, within Ac3H11_388at 69.348 kb on - strand, within Ac3H11_388at 69.348 kb on - strand, within Ac3H11_388at 69.417 kb on + strand, within Ac3H11_388at 69.417 kb on + strand, within Ac3H11_388at 69.417 kb on + strand, within Ac3H11_388at 69.417 kb on + strand, within Ac3H11_388at 69.418 kb on - strand, within Ac3H11_388at 69.418 kb on - strand, within Ac3H11_388at 69.418 kb on - strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.520 kb on + strand, within Ac3H11_388at 69.521 kb on - strand, within Ac3H11_388at 69.521 kb on - strand, within Ac3H11_388at 69.528 kb on + strand, within Ac3H11_388at 69.528 kb on + strand, within Ac3H11_388at 69.529 kb on - strand, within Ac3H11_388at 69.579 kb on + strand, within Ac3H11_388at 69.579 kb on + strand, within Ac3H11_388at 69.580 kb on - strand, within Ac3H11_388at 69.580 kb on - strand, within Ac3H11_388at 69.580 kb on - strand, within Ac3H11_388at 69.639 kb on + strand, within Ac3H11_388at 69.640 kb on - strand, within Ac3H11_388at 69.654 kb on + strand, within Ac3H11_388at 69.654 kb on + strand, within Ac3H11_388at 69.655 kb on - strand, within Ac3H11_388at 69.655 kb on - strand, within Ac3H11_388at 69.655 kb on - strand, within Ac3H11_388at 69.675 kb on + strand, within Ac3H11_388at 69.688 kb on - strand, within Ac3H11_388at 69.696 kb on + strand, within Ac3H11_388at 69.898 kb on - strand, within Ac3H11_388at 69.993 kb on + strand, within Ac3H11_388at 69.993 kb on + strand, within Ac3H11_388at 69.993 kb on + strand, within Ac3H11_388at 69.993 kb on + strand, within Ac3H11_388at 69.993 kb on + strand, within Ac3H11_388at 69.993 kb on + strand, within Ac3H11_388at 69.993 kb on + strand, within Ac3H11_388at 69.993 kb on + strand, within Ac3H11_388at 69.994 kb on - strand, within Ac3H11_388at 69.994 kb on - strand, within Ac3H11_388at 69.994 kb on - strand, within Ac3H11_388at 70.149 kb on + strand, within Ac3H11_388at 70.149 kb on + strand, within Ac3H11_388at 70.149 kb on + strand, within Ac3H11_388at 70.149 kb on + strand, within Ac3H11_388at 70.149 kb on + strand, within Ac3H11_388at 70.149 kb on + strand, within Ac3H11_388at 70.149 kb on + strand, within Ac3H11_388at 70.149 kb on + strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.150 kb on - strand, within Ac3H11_388at 70.326 kb on - strand, within Ac3H11_388at 70.444 kb on + strand, within Ac3H11_388at 70.445 kb on - strand, within Ac3H11_388at 70.445 kb on - strand, within Ac3H11_388at 70.752 kb on + strand, within Ac3H11_388at 70.753 kb on - strand, within Ac3H11_388at 70.882 kb on - strand, within Ac3H11_388at 71.080 kb on - strand, within Ac3H11_388at 71.080 kb on - strand, within Ac3H11_388at 71.080 kb on - strand, within Ac3H11_388at 71.222 kb on + strandat 71.223 kb on - strandat 71.578 kb on + strandat 71.578 kb on + strandat 71.578 kb on + strandat 71.579 kb on - strandat 71.579 kb on - strandat 71.593 kb on + strandat 71.593 kb on + strandat 71.593 kb on + strandat 71.593 kb on + strandat 71.594 kb on - strandat 71.714 kb on - strand, within Ac3H11_389at 71.749 kb on + strand, within Ac3H11_389at 71.749 kb on + strand, within Ac3H11_389at 71.750 kb on - strand, within Ac3H11_389at 71.750 kb on - strand, within Ac3H11_389at 71.918 kb on + strand, within Ac3H11_389at 71.919 kb on - strand, within Ac3H11_389at 72.148 kb on + strand, within Ac3H11_389at 72.148 kb on + strand, within Ac3H11_389at 72.148 kb on + strand, within Ac3H11_389at 72.148 kb on + strand, within Ac3H11_389at 72.149 kb on - strand, within Ac3H11_389at 72.149 kb on - strand, within Ac3H11_389at 72.149 kb on - strand, within Ac3H11_389at 72.149 kb on - strand, within Ac3H11_389at 72.149 kb on - strand, within Ac3H11_389at 72.149 kb on - strand, within Ac3H11_389at 72.149 kb on - strand, within Ac3H11_389at 72.436 kb on + strand, within Ac3H11_389at 72.436 kb on + strand, within Ac3H11_389at 72.436 kb on + strand, within Ac3H11_389at 72.436 kb on + strand, within Ac3H11_389at 72.436 kb on + strand, within Ac3H11_389at 72.436 kb on + strand, within Ac3H11_389at 72.436 kb on + strand, within Ac3H11_389at 72.437 kb on - strand, within Ac3H11_389at 72.437 kb on - strand, within Ac3H11_389at 72.437 kb on - strand, within Ac3H11_389at 72.437 kb on - strand, within Ac3H11_389at 72.437 kb on - strand, within Ac3H11_389

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.000025 mg/ml
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68,845 + -0.2
68,845 + -0.9
68,856 + -0.6
68,895 + +0.6
68,895 + +0.5
68,961 - -0.9
69,117 + +1.2
69,117 + -0.5
69,118 - -0.4
69,118 - -1.2
69,153 + -0.0
69,348 - Ac3H11_388 0.15 +1.1
69,348 - Ac3H11_388 0.15 +0.7
69,348 - Ac3H11_388 0.15 -0.2
69,417 + Ac3H11_388 0.18 -1.2
69,417 + Ac3H11_388 0.18 +0.8
69,417 + Ac3H11_388 0.18 -0.4
69,417 + Ac3H11_388 0.18 +0.2
69,418 - Ac3H11_388 0.18 +0.0
69,418 - Ac3H11_388 0.18 -0.5
69,418 - Ac3H11_388 0.18 +0.9
69,421 + Ac3H11_388 0.18 +0.2
69,421 + Ac3H11_388 0.18 +0.2
69,421 + Ac3H11_388 0.18 -0.2
69,421 + Ac3H11_388 0.18 +0.4
69,421 + Ac3H11_388 0.18 +0.4
69,421 + Ac3H11_388 0.18 -1.0
69,421 + Ac3H11_388 0.18 -1.9
69,421 + Ac3H11_388 0.18 -0.2
69,421 + Ac3H11_388 0.18 +0.1
69,422 - Ac3H11_388 0.18 -1.4
69,422 - Ac3H11_388 0.18 +1.1
69,422 - Ac3H11_388 0.18 -0.8
69,422 - Ac3H11_388 0.18 -0.4
69,422 - Ac3H11_388 0.18 +0.6
69,422 - Ac3H11_388 0.18 -0.3
69,422 - Ac3H11_388 0.18 +0.1
69,422 - Ac3H11_388 0.18 -0.2
69,422 - Ac3H11_388 0.18 -0.9
69,422 - Ac3H11_388 0.18 +0.1
69,520 + Ac3H11_388 0.22 -1.0
69,521 - Ac3H11_388 0.22 -0.3
69,521 - Ac3H11_388 0.22 -0.2
69,528 + Ac3H11_388 0.22 -0.1
69,528 + Ac3H11_388 0.22 -1.3
69,529 - Ac3H11_388 0.22 +1.2
69,579 + Ac3H11_388 0.24 +0.3
69,579 + Ac3H11_388 0.24 -1.4
69,580 - Ac3H11_388 0.25 -0.8
69,580 - Ac3H11_388 0.25 +1.3
69,580 - Ac3H11_388 0.25 -0.3
69,639 + Ac3H11_388 0.27 -0.7
69,640 - Ac3H11_388 0.27 -1.7
69,654 + Ac3H11_388 0.28 -0.5
69,654 + Ac3H11_388 0.28 -1.0
69,655 - Ac3H11_388 0.28 +0.4
69,655 - Ac3H11_388 0.28 -1.2
69,655 - Ac3H11_388 0.28 -0.0
69,675 + Ac3H11_388 0.28 +3.3
69,688 - Ac3H11_388 0.29 -0.8
69,696 + Ac3H11_388 0.29 +0.2
69,898 - Ac3H11_388 0.37 -0.9
69,993 + Ac3H11_388 0.41 -0.7
69,993 + Ac3H11_388 0.41 -0.6
69,993 + Ac3H11_388 0.41 -0.8
69,993 + Ac3H11_388 0.41 +0.2
69,993 + Ac3H11_388 0.41 +0.1
69,993 + Ac3H11_388 0.41 -0.5
69,993 + Ac3H11_388 0.41 -0.6
69,993 + Ac3H11_388 0.41 +0.4
69,994 - Ac3H11_388 0.41 -0.0
69,994 - Ac3H11_388 0.41 -0.4
69,994 - Ac3H11_388 0.41 -1.1
70,149 + Ac3H11_388 0.47 -1.8
70,149 + Ac3H11_388 0.47 +0.3
70,149 + Ac3H11_388 0.47 +0.5
70,149 + Ac3H11_388 0.47 -0.2
70,149 + Ac3H11_388 0.47 +1.4
70,149 + Ac3H11_388 0.47 -0.3
70,149 + Ac3H11_388 0.47 -0.1
70,149 + Ac3H11_388 0.47 +0.3
70,150 - Ac3H11_388 0.47 +0.4
70,150 - Ac3H11_388 0.47 +0.2
70,150 - Ac3H11_388 0.47 -1.1
70,150 - Ac3H11_388 0.47 +0.2
70,150 - Ac3H11_388 0.47 +0.6
70,150 - Ac3H11_388 0.47 -0.3
70,150 - Ac3H11_388 0.47 -0.4
70,150 - Ac3H11_388 0.47 +0.4
70,150 - Ac3H11_388 0.47 +1.0
70,150 - Ac3H11_388 0.47 -0.4
70,150 - Ac3H11_388 0.47 -0.2
70,150 - Ac3H11_388 0.47 +0.5
70,150 - Ac3H11_388 0.47 +0.3
70,326 - Ac3H11_388 0.55 -0.5
70,444 + Ac3H11_388 0.59 +0.4
70,445 - Ac3H11_388 0.59 -1.6
70,445 - Ac3H11_388 0.59 -0.1
70,752 + Ac3H11_388 0.72 +0.4
70,753 - Ac3H11_388 0.72 +0.7
70,882 - Ac3H11_388 0.77 +0.2
71,080 - Ac3H11_388 0.85 +1.0
71,080 - Ac3H11_388 0.85 -0.6
71,080 - Ac3H11_388 0.85 +0.2
71,222 + -1.0
71,223 - -0.5
71,578 + -0.7
71,578 + -0.6
71,578 + +0.6
71,579 - +0.2
71,579 - -0.2
71,593 + +0.4
71,593 + -0.4
71,593 + +0.2
71,593 + +0.4
71,594 - +1.1
71,714 - Ac3H11_389 0.17 -0.3
71,749 + Ac3H11_389 0.20 -0.3
71,749 + Ac3H11_389 0.20 +0.5
71,750 - Ac3H11_389 0.20 +1.0
71,750 - Ac3H11_389 0.20 +0.4
71,918 + Ac3H11_389 0.32 +1.0
71,919 - Ac3H11_389 0.32 -0.2
72,148 + Ac3H11_389 0.49 -0.0
72,148 + Ac3H11_389 0.49 -0.9
72,148 + Ac3H11_389 0.49 -1.4
72,148 + Ac3H11_389 0.49 +0.2
72,149 - Ac3H11_389 0.49 -1.1
72,149 - Ac3H11_389 0.49 -1.0
72,149 - Ac3H11_389 0.49 -0.7
72,149 - Ac3H11_389 0.49 -0.6
72,149 - Ac3H11_389 0.49 -0.1
72,149 - Ac3H11_389 0.49 -0.2
72,149 - Ac3H11_389 0.49 -0.4
72,436 + Ac3H11_389 0.70 +0.4
72,436 + Ac3H11_389 0.70 -0.7
72,436 + Ac3H11_389 0.70 -0.5
72,436 + Ac3H11_389 0.70 +0.6
72,436 + Ac3H11_389 0.70 +0.4
72,436 + Ac3H11_389 0.70 -0.8
72,436 + Ac3H11_389 0.70 +0.4
72,437 - Ac3H11_389 0.70 +0.0
72,437 - Ac3H11_389 0.70 +1.1
72,437 - Ac3H11_389 0.70 -1.2
72,437 - Ac3H11_389 0.70 -0.4
72,437 - Ac3H11_389 0.70 -0.1

Or see this region's nucleotide sequence