Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3514

Experiment: Doxycycline hyclate 0.000025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3513 and Ac3H11_3514 are separated by 131 nucleotidesAc3H11_3514 and Ac3H11_3515 are separated by 44 nucleotidesAc3H11_3515 and Ac3H11_3516 are separated by 28 nucleotides Ac3H11_3513 - Chemotaxis protein CheV (EC 2.7.3.-), at 59,976 to 60,935 _3513 Ac3H11_3514 - Antibiotic biosynthesis monooxygenase, at 61,067 to 61,369 _3514 Ac3H11_3515 - putative transcriptional regulator, LysR family, at 61,414 to 62,292 _3515 Ac3H11_3516 - hypothetical protein, at 62,321 to 62,725 _3516 Position (kb) 61 62Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.284 kb on + strand, within Ac3H11_3513at 60.285 kb on - strand, within Ac3H11_3513at 60.285 kb on - strand, within Ac3H11_3513at 60.285 kb on - strand, within Ac3H11_3513at 60.634 kb on + strand, within Ac3H11_3513at 60.634 kb on + strand, within Ac3H11_3513at 60.635 kb on - strand, within Ac3H11_3513at 60.963 kb on + strandat 60.964 kb on - strandat 60.974 kb on - strandat 61.011 kb on - strandat 61.011 kb on - strandat 61.033 kb on + strandat 61.033 kb on + strandat 61.033 kb on + strandat 61.034 kb on - strandat 61.122 kb on + strand, within Ac3H11_3514at 61.122 kb on + strand, within Ac3H11_3514at 61.122 kb on + strand, within Ac3H11_3514at 61.122 kb on + strand, within Ac3H11_3514at 61.122 kb on + strand, within Ac3H11_3514at 61.122 kb on + strand, within Ac3H11_3514at 61.123 kb on - strand, within Ac3H11_3514at 61.123 kb on - strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.136 kb on + strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.137 kb on - strand, within Ac3H11_3514at 61.155 kb on + strand, within Ac3H11_3514at 61.156 kb on - strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.217 kb on + strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.218 kb on - strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.221 kb on + strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.222 kb on - strand, within Ac3H11_3514at 61.266 kb on + strand, within Ac3H11_3514at 61.266 kb on + strand, within Ac3H11_3514at 61.267 kb on - strand, within Ac3H11_3514at 61.832 kb on + strand, within Ac3H11_3515at 61.832 kb on + strand, within Ac3H11_3515at 61.832 kb on + strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 62.093 kb on + strand, within Ac3H11_3515at 62.094 kb on - strand, within Ac3H11_3515at 62.094 kb on - strand, within Ac3H11_3515at 62.250 kb on - strandat 62.265 kb on - strandat 62.265 kb on - strandat 62.358 kb on + strandat 62.359 kb on - strandat 62.359 kb on - strandat 62.359 kb on - strandat 62.359 kb on - strandat 62.359 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.000025 mg/ml
remove
60,284 + Ac3H11_3513 0.32 -0.7
60,284 + Ac3H11_3513 0.32 +0.3
60,284 + Ac3H11_3513 0.32 -1.0
60,284 + Ac3H11_3513 0.32 +0.5
60,284 + Ac3H11_3513 0.32 +0.2
60,284 + Ac3H11_3513 0.32 +0.5
60,284 + Ac3H11_3513 0.32 +0.8
60,284 + Ac3H11_3513 0.32 -0.5
60,285 - Ac3H11_3513 0.32 +0.2
60,285 - Ac3H11_3513 0.32 -0.1
60,285 - Ac3H11_3513 0.32 +0.6
60,634 + Ac3H11_3513 0.69 -2.1
60,634 + Ac3H11_3513 0.69 +0.0
60,635 - Ac3H11_3513 0.69 +1.0
60,963 + +0.3
60,964 - -1.0
60,974 - +1.1
61,011 - -1.0
61,011 - +0.2
61,033 + +1.3
61,033 + -0.3
61,033 + +0.7
61,034 - -0.5
61,122 + Ac3H11_3514 0.18 -0.1
61,122 + Ac3H11_3514 0.18 +0.1
61,122 + Ac3H11_3514 0.18 +0.2
61,122 + Ac3H11_3514 0.18 +0.5
61,122 + Ac3H11_3514 0.18 +0.5
61,122 + Ac3H11_3514 0.18 -1.8
61,123 - Ac3H11_3514 0.18 -0.1
61,123 - Ac3H11_3514 0.18 +0.8
61,136 + Ac3H11_3514 0.23 +0.1
61,136 + Ac3H11_3514 0.23 -0.4
61,136 + Ac3H11_3514 0.23 -1.1
61,136 + Ac3H11_3514 0.23 +0.0
61,136 + Ac3H11_3514 0.23 +0.3
61,136 + Ac3H11_3514 0.23 +0.7
61,136 + Ac3H11_3514 0.23 -0.1
61,136 + Ac3H11_3514 0.23 +0.3
61,137 - Ac3H11_3514 0.23 +0.4
61,137 - Ac3H11_3514 0.23 -0.1
61,137 - Ac3H11_3514 0.23 -0.4
61,137 - Ac3H11_3514 0.23 +0.3
61,137 - Ac3H11_3514 0.23 -0.7
61,137 - Ac3H11_3514 0.23 -1.0
61,137 - Ac3H11_3514 0.23 +0.6
61,137 - Ac3H11_3514 0.23 +4.0
61,155 + Ac3H11_3514 0.29 +0.5
61,156 - Ac3H11_3514 0.29 +0.7
61,217 + Ac3H11_3514 0.50 -0.2
61,217 + Ac3H11_3514 0.50 -0.5
61,217 + Ac3H11_3514 0.50 +0.3
61,217 + Ac3H11_3514 0.50 +0.5
61,217 + Ac3H11_3514 0.50 +0.1
61,217 + Ac3H11_3514 0.50 +0.0
61,217 + Ac3H11_3514 0.50 +0.1
61,217 + Ac3H11_3514 0.50 +0.7
61,217 + Ac3H11_3514 0.50 -1.0
61,217 + Ac3H11_3514 0.50 -0.5
61,217 + Ac3H11_3514 0.50 +1.0
61,217 + Ac3H11_3514 0.50 -0.9
61,217 + Ac3H11_3514 0.50 -0.4
61,217 + Ac3H11_3514 0.50 -1.0
61,217 + Ac3H11_3514 0.50 +0.3
61,217 + Ac3H11_3514 0.50 -0.2
61,217 + Ac3H11_3514 0.50 +0.4
61,218 - Ac3H11_3514 0.50 -0.5
61,218 - Ac3H11_3514 0.50 -0.9
61,218 - Ac3H11_3514 0.50 +0.8
61,218 - Ac3H11_3514 0.50 +0.0
61,218 - Ac3H11_3514 0.50 +0.2
61,218 - Ac3H11_3514 0.50 +0.7
61,218 - Ac3H11_3514 0.50 +0.1
61,218 - Ac3H11_3514 0.50 -0.7
61,218 - Ac3H11_3514 0.50 +0.1
61,218 - Ac3H11_3514 0.50 +0.6
61,218 - Ac3H11_3514 0.50 -0.1
61,218 - Ac3H11_3514 0.50 -0.2
61,218 - Ac3H11_3514 0.50 +0.1
61,218 - Ac3H11_3514 0.50 -0.1
61,218 - Ac3H11_3514 0.50 -0.4
61,218 - Ac3H11_3514 0.50 -0.4
61,221 + Ac3H11_3514 0.51 -0.4
61,221 + Ac3H11_3514 0.51 +1.7
61,221 + Ac3H11_3514 0.51 +1.3
61,221 + Ac3H11_3514 0.51 +0.3
61,221 + Ac3H11_3514 0.51 +2.9
61,221 + Ac3H11_3514 0.51 -0.1
61,222 - Ac3H11_3514 0.51 +0.3
61,222 - Ac3H11_3514 0.51 -0.6
61,222 - Ac3H11_3514 0.51 +0.0
61,222 - Ac3H11_3514 0.51 -0.8
61,222 - Ac3H11_3514 0.51 -0.2
61,222 - Ac3H11_3514 0.51 -0.6
61,222 - Ac3H11_3514 0.51 +0.5
61,266 + Ac3H11_3514 0.66 -1.0
61,266 + Ac3H11_3514 0.66 -0.1
61,267 - Ac3H11_3514 0.66 +2.3
61,832 + Ac3H11_3515 0.48 -1.2
61,832 + Ac3H11_3515 0.48 -1.0
61,832 + Ac3H11_3515 0.48 -0.0
61,833 - Ac3H11_3515 0.48 -0.6
61,833 - Ac3H11_3515 0.48 +0.4
61,833 - Ac3H11_3515 0.48 +3.4
61,833 - Ac3H11_3515 0.48 -0.3
62,093 + Ac3H11_3515 0.77 +0.2
62,094 - Ac3H11_3515 0.77 -0.6
62,094 - Ac3H11_3515 0.77 +0.4
62,250 - +0.4
62,265 - -0.3
62,265 - +0.1
62,358 + +0.9
62,359 - +0.6
62,359 - +1.5
62,359 - +0.7
62,359 - -0.2
62,359 - +0.1

Or see this region's nucleotide sequence