Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_248

Experiment: Doxycycline hyclate 0.000025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_247 and Ac3H11_248 are separated by 183 nucleotidesAc3H11_248 and Ac3H11_249 overlap by 13 nucleotidesAc3H11_249 and Ac3H11_250 overlap by 42 nucleotides Ac3H11_247 - FIG00349496: hypothetical protein, at 63,899 to 64,639 _247 Ac3H11_248 - Ferrichrome-iron receptor, at 64,823 to 66,955 _248 Ac3H11_249 - hypothetical protein, at 66,943 to 67,128 _249 Ac3H11_250 - Ferrichrome-iron receptor, at 67,087 to 69,255 _250 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 64.170 kb on - strand, within Ac3H11_247at 64.170 kb on - strand, within Ac3H11_247at 64.488 kb on - strand, within Ac3H11_247at 64.544 kb on + strand, within Ac3H11_247at 64.544 kb on + strand, within Ac3H11_247at 64.560 kb on - strand, within Ac3H11_247at 64.560 kb on - strand, within Ac3H11_247at 64.560 kb on - strand, within Ac3H11_247at 65.162 kb on + strand, within Ac3H11_248at 65.162 kb on + strand, within Ac3H11_248at 65.163 kb on - strand, within Ac3H11_248at 65.172 kb on - strand, within Ac3H11_248at 65.172 kb on - strand, within Ac3H11_248at 65.172 kb on - strand, within Ac3H11_248at 65.219 kb on + strand, within Ac3H11_248at 65.219 kb on + strand, within Ac3H11_248at 65.219 kb on + strand, within Ac3H11_248at 65.220 kb on - strand, within Ac3H11_248at 65.220 kb on - strand, within Ac3H11_248at 65.220 kb on - strand, within Ac3H11_248at 65.220 kb on - strand, within Ac3H11_248at 65.349 kb on - strand, within Ac3H11_248at 65.349 kb on - strand, within Ac3H11_248at 65.619 kb on + strand, within Ac3H11_248at 65.894 kb on + strand, within Ac3H11_248at 65.894 kb on + strand, within Ac3H11_248at 65.895 kb on - strand, within Ac3H11_248at 65.895 kb on - strand, within Ac3H11_248at 65.999 kb on + strand, within Ac3H11_248at 65.999 kb on + strand, within Ac3H11_248at 66.041 kb on + strand, within Ac3H11_248at 66.041 kb on + strand, within Ac3H11_248at 66.042 kb on - strand, within Ac3H11_248at 66.042 kb on - strand, within Ac3H11_248at 66.087 kb on + strand, within Ac3H11_248at 66.200 kb on + strand, within Ac3H11_248at 66.200 kb on + strand, within Ac3H11_248at 66.201 kb on - strand, within Ac3H11_248at 66.201 kb on - strand, within Ac3H11_248at 66.674 kb on + strand, within Ac3H11_248at 66.774 kb on - strandat 66.861 kb on - strandat 66.864 kb on - strandat 66.864 kb on - strandat 67.010 kb on + strand, within Ac3H11_249at 67.011 kb on - strand, within Ac3H11_249at 67.423 kb on + strand, within Ac3H11_250at 67.424 kb on - strand, within Ac3H11_250at 67.424 kb on - strand, within Ac3H11_250at 67.424 kb on - strand, within Ac3H11_250at 67.477 kb on + strand, within Ac3H11_250at 67.478 kb on - strand, within Ac3H11_250at 67.534 kb on + strand, within Ac3H11_250at 67.582 kb on + strand, within Ac3H11_250at 67.582 kb on + strand, within Ac3H11_250at 67.583 kb on - strand, within Ac3H11_250at 67.936 kb on + strand, within Ac3H11_250at 67.937 kb on - strand, within Ac3H11_250

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.000025 mg/ml
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64,170 - Ac3H11_247 0.37 -0.1
64,170 - Ac3H11_247 0.37 +0.1
64,488 - Ac3H11_247 0.79 -0.6
64,544 + Ac3H11_247 0.87 -0.0
64,544 + Ac3H11_247 0.87 -0.9
64,560 - Ac3H11_247 0.89 +0.0
64,560 - Ac3H11_247 0.89 -0.1
64,560 - Ac3H11_247 0.89 -0.5
65,162 + Ac3H11_248 0.16 +0.3
65,162 + Ac3H11_248 0.16 +0.2
65,163 - Ac3H11_248 0.16 +0.1
65,172 - Ac3H11_248 0.16 -0.4
65,172 - Ac3H11_248 0.16 +0.4
65,172 - Ac3H11_248 0.16 -0.9
65,219 + Ac3H11_248 0.19 -0.7
65,219 + Ac3H11_248 0.19 +0.5
65,219 + Ac3H11_248 0.19 +0.6
65,220 - Ac3H11_248 0.19 +0.2
65,220 - Ac3H11_248 0.19 -0.5
65,220 - Ac3H11_248 0.19 -0.1
65,220 - Ac3H11_248 0.19 -0.1
65,349 - Ac3H11_248 0.25 +0.5
65,349 - Ac3H11_248 0.25 -0.7
65,619 + Ac3H11_248 0.37 +0.1
65,894 + Ac3H11_248 0.50 +0.9
65,894 + Ac3H11_248 0.50 +0.3
65,895 - Ac3H11_248 0.50 +0.3
65,895 - Ac3H11_248 0.50 -0.2
65,999 + Ac3H11_248 0.55 +0.6
65,999 + Ac3H11_248 0.55 -1.8
66,041 + Ac3H11_248 0.57 +0.1
66,041 + Ac3H11_248 0.57 -0.0
66,042 - Ac3H11_248 0.57 -0.1
66,042 - Ac3H11_248 0.57 -0.4
66,087 + Ac3H11_248 0.59 -0.7
66,200 + Ac3H11_248 0.65 -0.5
66,200 + Ac3H11_248 0.65 -0.8
66,201 - Ac3H11_248 0.65 -0.1
66,201 - Ac3H11_248 0.65 -0.0
66,674 + Ac3H11_248 0.87 -0.5
66,774 - +0.4
66,861 - -0.3
66,864 - -0.4
66,864 - +1.8
67,010 + Ac3H11_249 0.36 +1.6
67,011 - Ac3H11_249 0.37 +0.6
67,423 + Ac3H11_250 0.15 -0.7
67,424 - Ac3H11_250 0.16 -0.4
67,424 - Ac3H11_250 0.16 +0.0
67,424 - Ac3H11_250 0.16 +0.5
67,477 + Ac3H11_250 0.18 +0.0
67,478 - Ac3H11_250 0.18 +0.2
67,534 + Ac3H11_250 0.21 +0.4
67,582 + Ac3H11_250 0.23 +0.5
67,582 + Ac3H11_250 0.23 -0.9
67,583 - Ac3H11_250 0.23 +0.8
67,936 + Ac3H11_250 0.39 +1.3
67,937 - Ac3H11_250 0.39 -0.3

Or see this region's nucleotide sequence