Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1838

Experiment: Doxycycline hyclate 0.000025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1837 and Ac3H11_1838 are separated by 88 nucleotidesAc3H11_1838 and Ac3H11_1839 overlap by 4 nucleotidesAc3H11_1839 and Ac3H11_1840 overlap by 4 nucleotides Ac3H11_1837 - Beta-lactamase-like, at 37,139 to 38,083 _1837 Ac3H11_1838 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 38,172 to 38,561 _1838 Ac3H11_1839 - Ribokinase (EC 2.7.1.15), at 38,558 to 39,502 _1839 Ac3H11_1840 - Ribose operon repressor, at 39,499 to 40,521 _1840 Position (kb) 38 39Strain fitness (log2 ratio) -1 0 1at 37.267 kb on - strand, within Ac3H11_1837at 37.267 kb on - strand, within Ac3H11_1837at 37.267 kb on - strand, within Ac3H11_1837at 37.333 kb on - strand, within Ac3H11_1837at 37.333 kb on - strand, within Ac3H11_1837at 37.356 kb on + strand, within Ac3H11_1837at 37.357 kb on - strand, within Ac3H11_1837at 37.744 kb on - strand, within Ac3H11_1837at 37.744 kb on - strand, within Ac3H11_1837at 37.755 kb on + strand, within Ac3H11_1837at 37.755 kb on + strand, within Ac3H11_1837at 37.756 kb on - strand, within Ac3H11_1837at 37.756 kb on - strand, within Ac3H11_1837at 37.923 kb on - strand, within Ac3H11_1837at 38.102 kb on - strandat 38.784 kb on + strand, within Ac3H11_1839

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.000025 mg/ml
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37,267 - Ac3H11_1837 0.14 +1.6
37,267 - Ac3H11_1837 0.14 +0.0
37,267 - Ac3H11_1837 0.14 -0.7
37,333 - Ac3H11_1837 0.21 -0.3
37,333 - Ac3H11_1837 0.21 -0.3
37,356 + Ac3H11_1837 0.23 +0.4
37,357 - Ac3H11_1837 0.23 -0.1
37,744 - Ac3H11_1837 0.64 -0.2
37,744 - Ac3H11_1837 0.64 -0.0
37,755 + Ac3H11_1837 0.65 -1.2
37,755 + Ac3H11_1837 0.65 -0.5
37,756 - Ac3H11_1837 0.65 +0.5
37,756 - Ac3H11_1837 0.65 -1.2
37,923 - Ac3H11_1837 0.83 -0.2
38,102 - -0.0
38,784 + Ac3H11_1839 0.24 -0.3

Or see this region's nucleotide sequence