Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1837

Experiment: Doxycycline hyclate 0.000025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1835 and Ac3H11_1836 are separated by 186 nucleotidesAc3H11_1836 and Ac3H11_1837 are separated by 36 nucleotidesAc3H11_1837 and Ac3H11_1838 are separated by 88 nucleotidesAc3H11_1838 and Ac3H11_1839 overlap by 4 nucleotides Ac3H11_1835 - hypothetical protein, at 35,948 to 36,529 _1835 Ac3H11_1836 - hypothetical protein, at 36,716 to 37,102 _1836 Ac3H11_1837 - Beta-lactamase-like, at 37,139 to 38,083 _1837 Ac3H11_1838 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 38,172 to 38,561 _1838 Ac3H11_1839 - Ribokinase (EC 2.7.1.15), at 38,558 to 39,502 _1839 Position (kb) 37 38 39Strain fitness (log2 ratio) -1 0 1 2 3at 36.173 kb on + strand, within Ac3H11_1835at 36.173 kb on + strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.256 kb on + strand, within Ac3H11_1835at 36.356 kb on + strand, within Ac3H11_1835at 36.356 kb on + strand, within Ac3H11_1835at 36.357 kb on - strand, within Ac3H11_1835at 36.416 kb on + strand, within Ac3H11_1835at 36.416 kb on + strandat 36.417 kb on - strand, within Ac3H11_1835at 36.417 kb on - strand, within Ac3H11_1835at 36.417 kb on - strand, within Ac3H11_1835at 36.464 kb on + strand, within Ac3H11_1835at 36.464 kb on + strand, within Ac3H11_1835at 36.465 kb on - strand, within Ac3H11_1835at 36.465 kb on - strand, within Ac3H11_1835at 36.465 kb on - strand, within Ac3H11_1835at 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.528 kb on - strandat 36.528 kb on - strandat 36.995 kb on + strand, within Ac3H11_1836at 36.995 kb on + strand, within Ac3H11_1836at 36.995 kb on + strand, within Ac3H11_1836at 36.996 kb on - strand, within Ac3H11_1836at 36.996 kb on - strand, within Ac3H11_1836at 36.996 kb on - strand, within Ac3H11_1836at 36.996 kb on - strand, within Ac3H11_1836at 36.996 kb on - strand, within Ac3H11_1836at 37.100 kb on + strandat 37.100 kb on + strandat 37.100 kb on + strandat 37.100 kb on + strandat 37.100 kb on + strandat 37.101 kb on - strandat 37.267 kb on - strand, within Ac3H11_1837at 37.267 kb on - strand, within Ac3H11_1837at 37.267 kb on - strand, within Ac3H11_1837at 37.333 kb on - strand, within Ac3H11_1837at 37.333 kb on - strand, within Ac3H11_1837at 37.356 kb on + strand, within Ac3H11_1837at 37.357 kb on - strand, within Ac3H11_1837at 37.744 kb on - strand, within Ac3H11_1837at 37.744 kb on - strand, within Ac3H11_1837at 37.755 kb on + strand, within Ac3H11_1837at 37.755 kb on + strand, within Ac3H11_1837at 37.756 kb on - strand, within Ac3H11_1837at 37.756 kb on - strand, within Ac3H11_1837at 37.923 kb on - strand, within Ac3H11_1837at 38.102 kb on - strandat 38.784 kb on + strand, within Ac3H11_1839

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.000025 mg/ml
remove
36,173 + Ac3H11_1835 0.39 +0.1
36,173 + Ac3H11_1835 0.39 -0.2
36,174 - Ac3H11_1835 0.39 +0.9
36,174 - Ac3H11_1835 0.39 -1.5
36,174 - Ac3H11_1835 0.39 -0.6
36,174 - Ac3H11_1835 0.39 +0.4
36,174 - Ac3H11_1835 0.39 -0.6
36,174 - Ac3H11_1835 0.39 -0.2
36,256 + Ac3H11_1835 0.53 -0.9
36,356 + Ac3H11_1835 0.70 -1.4
36,356 + Ac3H11_1835 0.70 -0.4
36,357 - Ac3H11_1835 0.70 -0.3
36,416 + Ac3H11_1835 0.80 +0.9
36,416 + +1.6
36,417 - Ac3H11_1835 0.81 -0.3
36,417 - Ac3H11_1835 0.81 +0.1
36,417 - Ac3H11_1835 0.81 -0.1
36,464 + Ac3H11_1835 0.89 -0.8
36,464 + Ac3H11_1835 0.89 +0.3
36,465 - Ac3H11_1835 0.89 +0.3
36,465 - Ac3H11_1835 0.89 -0.3
36,465 - Ac3H11_1835 0.89 +0.7
36,515 + -1.0
36,515 + +1.2
36,515 + +0.3
36,515 + -0.4
36,515 + +0.1
36,515 + +0.7
36,515 + -0.1
36,515 + -0.9
36,516 - -0.4
36,516 - +0.2
36,516 - -0.2
36,516 - -0.6
36,516 - +0.4
36,516 - -0.2
36,516 - +1.1
36,527 + -1.2
36,527 + -0.0
36,527 + +0.2
36,527 + +0.6
36,527 + -0.4
36,528 - -0.3
36,528 - +0.1
36,995 + Ac3H11_1836 0.72 +0.6
36,995 + Ac3H11_1836 0.72 +0.2
36,995 + Ac3H11_1836 0.72 -0.7
36,996 - Ac3H11_1836 0.72 +0.4
36,996 - Ac3H11_1836 0.72 +0.1
36,996 - Ac3H11_1836 0.72 +2.9
36,996 - Ac3H11_1836 0.72 +0.6
36,996 - Ac3H11_1836 0.72 +0.5
37,100 + -0.1
37,100 + -0.7
37,100 + +0.9
37,100 + +0.8
37,100 + -0.3
37,101 - -0.7
37,267 - Ac3H11_1837 0.14 +1.6
37,267 - Ac3H11_1837 0.14 +0.0
37,267 - Ac3H11_1837 0.14 -0.7
37,333 - Ac3H11_1837 0.21 -0.3
37,333 - Ac3H11_1837 0.21 -0.3
37,356 + Ac3H11_1837 0.23 +0.4
37,357 - Ac3H11_1837 0.23 -0.1
37,744 - Ac3H11_1837 0.64 -0.2
37,744 - Ac3H11_1837 0.64 -0.0
37,755 + Ac3H11_1837 0.65 -1.2
37,755 + Ac3H11_1837 0.65 -0.5
37,756 - Ac3H11_1837 0.65 +0.5
37,756 - Ac3H11_1837 0.65 -1.2
37,923 - Ac3H11_1837 0.83 -0.2
38,102 - -0.0
38,784 + Ac3H11_1839 0.24 -0.3

Or see this region's nucleotide sequence