Experiment: Doxycycline hyclate 0.000025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1343 and Ac3H11_1344 are separated by 46 nucleotides Ac3H11_1344 and Ac3H11_1345 are separated by 288 nucleotides
Ac3H11_1343 - PPO candidate 1, at 31,918 to 32,526
_1343
Ac3H11_1344 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 32,573 to 34,783
_1344
Ac3H11_1345 - putative exported protein, at 35,072 to 38,914
_1345
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2 at 31.622 kb on + strand at 31.622 kb on + strand at 31.622 kb on + strand at 31.622 kb on + strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.623 kb on - strand at 31.641 kb on + strand at 31.642 kb on - strand at 31.642 kb on - strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.845 kb on + strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.846 kb on - strand at 31.886 kb on + strand at 31.886 kb on + strand at 31.886 kb on + strand at 31.886 kb on + strand at 31.886 kb on + strand at 31.886 kb on + strand at 31.887 kb on - strand at 31.887 kb on - strand at 31.887 kb on - strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.890 kb on + strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.891 kb on - strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.928 kb on + strand at 31.929 kb on - strand at 31.929 kb on - strand at 31.929 kb on - strand at 31.929 kb on - strand at 31.929 kb on - strand at 31.929 kb on - strand at 31.947 kb on - strand at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.012 kb on + strand, within Ac3H11_1343 at 32.013 kb on - strand, within Ac3H11_1343 at 32.013 kb on - strand, within Ac3H11_1343 at 32.013 kb on - strand, within Ac3H11_1343 at 32.013 kb on - strand, within Ac3H11_1343 at 32.075 kb on + strand, within Ac3H11_1343 at 32.075 kb on + strand, within Ac3H11_1343 at 32.076 kb on - strand, within Ac3H11_1343 at 32.076 kb on - strand, within Ac3H11_1343 at 32.076 kb on - strand, within Ac3H11_1343 at 32.077 kb on + strand, within Ac3H11_1343 at 32.077 kb on + strand, within Ac3H11_1343 at 32.077 kb on + strand, within Ac3H11_1343 at 32.077 kb on + strand, within Ac3H11_1343 at 32.078 kb on - strand, within Ac3H11_1343 at 32.078 kb on - strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.105 kb on + strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.106 kb on - strand, within Ac3H11_1343 at 32.132 kb on + strand, within Ac3H11_1343 at 32.132 kb on + strand, within Ac3H11_1343 at 32.133 kb on - strand, within Ac3H11_1343 at 32.133 kb on - strand, within Ac3H11_1343 at 32.133 kb on - strand, within Ac3H11_1343 at 32.228 kb on + strand, within Ac3H11_1343 at 32.229 kb on - strand, within Ac3H11_1343 at 32.280 kb on + strand, within Ac3H11_1343 at 32.280 kb on + strand, within Ac3H11_1343 at 32.280 kb on + strand, within Ac3H11_1343 at 32.324 kb on + strand, within Ac3H11_1343 at 32.490 kb on + strand at 32.508 kb on + strand at 32.508 kb on + strand at 32.574 kb on + strand at 34.793 kb on - strand at 34.945 kb on + strand at 34.945 kb on + strand at 34.990 kb on - strand at 35.145 kb on - strand at 35.159 kb on + strand at 35.159 kb on + strand at 35.159 kb on + strand at 35.159 kb on + strand at 35.160 kb on - strand at 35.184 kb on + strand at 35.184 kb on + strand at 35.340 kb on + strand at 35.340 kb on + strand at 35.364 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.000025 mg/ml remove 31,622 + -0.2 31,622 + +0.8 31,622 + -0.3 31,622 + -1.5 31,623 - -0.7 31,623 - +0.7 31,623 - +0.6 31,623 - -0.8 31,623 - -0.4 31,623 - -1.5 31,623 - +0.3 31,623 - -0.2 31,623 - +0.5 31,623 - -0.7 31,623 - +0.1 31,623 - -0.6 31,623 - -2.4 31,641 + +0.5 31,642 - -0.7 31,642 - -0.4 31,845 + +0.4 31,845 + -0.8 31,845 + +0.9 31,845 + -1.0 31,845 + -1.3 31,845 + +0.7 31,845 + -2.1 31,846 - -0.1 31,846 - -0.5 31,846 - +0.1 31,846 - -0.7 31,846 - +0.2 31,846 - -0.4 31,846 - +0.2 31,886 + +0.3 31,886 + -0.0 31,886 + +0.4 31,886 + +0.3 31,886 + +0.2 31,886 + -0.5 31,887 - +1.0 31,887 - -0.9 31,887 - -0.3 31,890 + -0.3 31,890 + +2.1 31,890 + +0.3 31,890 + +0.6 31,890 + +0.5 31,890 + +0.1 31,890 + +1.0 31,890 + +1.0 31,890 + +0.8 31,890 + -0.5 31,890 + +0.6 31,890 + +0.6 31,890 + -0.4 31,890 + -2.1 31,891 - -0.1 31,891 - +0.2 31,891 - +0.6 31,891 - +0.2 31,891 - -0.6 31,891 - -1.3 31,891 - -0.4 31,891 - +0.2 31,928 + -0.3 31,928 + +1.0 31,928 + +0.7 31,928 + -0.1 31,928 + -1.4 31,928 + +1.7 31,928 + +0.4 31,928 + -0.3 31,928 + +0.2 31,929 - -0.4 31,929 - +0.3 31,929 - +0.5 31,929 - +0.4 31,929 - +2.5 31,929 - +0.5 31,947 - +1.3 32,012 + Ac3H11_1343 0.15 -0.3 32,012 + Ac3H11_1343 0.15 +0.5 32,012 + Ac3H11_1343 0.15 +0.5 32,012 + Ac3H11_1343 0.15 +0.4 32,012 + Ac3H11_1343 0.15 -0.3 32,012 + Ac3H11_1343 0.15 +0.3 32,012 + Ac3H11_1343 0.15 -2.1 32,012 + Ac3H11_1343 0.15 +0.6 32,013 - Ac3H11_1343 0.16 -0.1 32,013 - Ac3H11_1343 0.16 -1.6 32,013 - Ac3H11_1343 0.16 +0.2 32,013 - Ac3H11_1343 0.16 -0.5 32,075 + Ac3H11_1343 0.26 -1.0 32,075 + Ac3H11_1343 0.26 -0.4 32,076 - Ac3H11_1343 0.26 -2.6 32,076 - Ac3H11_1343 0.26 +0.2 32,076 - Ac3H11_1343 0.26 -0.1 32,077 + Ac3H11_1343 0.26 +0.9 32,077 + Ac3H11_1343 0.26 -0.2 32,077 + Ac3H11_1343 0.26 -0.9 32,077 + Ac3H11_1343 0.26 +0.6 32,078 - Ac3H11_1343 0.26 +0.2 32,078 - Ac3H11_1343 0.26 -1.8 32,105 + Ac3H11_1343 0.31 -0.3 32,105 + Ac3H11_1343 0.31 -0.3 32,105 + Ac3H11_1343 0.31 +0.7 32,105 + Ac3H11_1343 0.31 -0.1 32,105 + Ac3H11_1343 0.31 +0.1 32,105 + Ac3H11_1343 0.31 -0.2 32,105 + Ac3H11_1343 0.31 -1.5 32,105 + Ac3H11_1343 0.31 -0.3 32,105 + Ac3H11_1343 0.31 -0.4 32,105 + Ac3H11_1343 0.31 +0.8 32,105 + Ac3H11_1343 0.31 -0.0 32,105 + Ac3H11_1343 0.31 +0.0 32,105 + Ac3H11_1343 0.31 -0.1 32,105 + Ac3H11_1343 0.31 -0.0 32,105 + Ac3H11_1343 0.31 +0.4 32,106 - Ac3H11_1343 0.31 -0.5 32,106 - Ac3H11_1343 0.31 +1.3 32,106 - Ac3H11_1343 0.31 -0.6 32,106 - Ac3H11_1343 0.31 -0.7 32,106 - Ac3H11_1343 0.31 -0.0 32,106 - Ac3H11_1343 0.31 -0.1 32,106 - Ac3H11_1343 0.31 -0.5 32,106 - Ac3H11_1343 0.31 -0.5 32,106 - Ac3H11_1343 0.31 +0.5 32,106 - Ac3H11_1343 0.31 -0.7 32,106 - Ac3H11_1343 0.31 -0.2 32,106 - Ac3H11_1343 0.31 -0.0 32,106 - Ac3H11_1343 0.31 -0.4 32,106 - Ac3H11_1343 0.31 +0.4 32,106 - Ac3H11_1343 0.31 -0.8 32,106 - Ac3H11_1343 0.31 -0.1 32,106 - Ac3H11_1343 0.31 -1.6 32,106 - Ac3H11_1343 0.31 +0.6 32,106 - Ac3H11_1343 0.31 +0.6 32,106 - Ac3H11_1343 0.31 -0.1 32,106 - Ac3H11_1343 0.31 -0.1 32,132 + Ac3H11_1343 0.35 -0.2 32,132 + Ac3H11_1343 0.35 +0.8 32,133 - Ac3H11_1343 0.35 -0.1 32,133 - Ac3H11_1343 0.35 -0.5 32,133 - Ac3H11_1343 0.35 -0.2 32,228 + Ac3H11_1343 0.51 +0.1 32,229 - Ac3H11_1343 0.51 -0.6 32,280 + Ac3H11_1343 0.59 -0.8 32,280 + Ac3H11_1343 0.59 -0.1 32,280 + Ac3H11_1343 0.59 +0.7 32,324 + Ac3H11_1343 0.67 +0.6 32,490 + -0.4 32,508 + -0.9 32,508 + +0.1 32,574 + +0.3 34,793 - -1.3 34,945 + -0.9 34,945 + +0.8 34,990 - -0.3 35,145 - +0.3 35,159 + +0.3 35,159 + +0.9 35,159 + -1.3 35,159 + -1.1 35,160 - +0.7 35,184 + -0.1 35,184 + +0.6 35,340 + +0.3 35,340 + +0.9 35,364 + -1.3
Or see this region's nucleotide sequence