Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1079

Experiment: Doxycycline hyclate 0.000025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1078 and Ac3H11_1079 are separated by 80 nucleotidesAc3H11_1079 and Ac3H11_1080 are separated by 27 nucleotidesAc3H11_1080 and Ac3H11_1081 overlap by 4 nucleotides Ac3H11_1078 - hypothetical protein, at 9,560 to 10,378 _1078 Ac3H11_1079 - NADP-dependent malic enzyme (EC 1.1.1.40), at 10,459 to 12,765 _1079 Ac3H11_1080 - hypothetical protein, at 12,793 to 12,948 _1080 Ac3H11_1081 - Xanthine-uracil permease, at 12,945 to 14,432 _1081 Position (kb) 10 11 12 13Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 9.487 kb on + strandat 9.488 kb on - strandat 9.488 kb on - strandat 9.531 kb on - strandat 9.597 kb on + strandat 9.598 kb on - strandat 9.598 kb on - strandat 9.598 kb on - strandat 10.355 kb on + strandat 10.355 kb on + strandat 10.355 kb on + strandat 10.355 kb on + strandat 10.356 kb on - strandat 10.356 kb on - strandat 10.356 kb on - strandat 10.544 kb on + strandat 10.544 kb on + strandat 10.544 kb on + strandat 10.545 kb on - strandat 10.545 kb on - strandat 10.545 kb on - strandat 10.545 kb on - strandat 10.619 kb on + strandat 10.619 kb on + strandat 10.620 kb on - strandat 10.694 kb on + strand, within Ac3H11_1079at 10.694 kb on + strand, within Ac3H11_1079at 10.694 kb on + strand, within Ac3H11_1079at 10.695 kb on - strand, within Ac3H11_1079at 10.695 kb on - strand, within Ac3H11_1079at 10.829 kb on + strand, within Ac3H11_1079at 10.926 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.943 kb on + strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 10.944 kb on - strand, within Ac3H11_1079at 11.000 kb on + strand, within Ac3H11_1079at 11.001 kb on - strand, within Ac3H11_1079at 11.060 kb on + strand, within Ac3H11_1079at 11.060 kb on + strand, within Ac3H11_1079at 11.060 kb on + strand, within Ac3H11_1079at 11.060 kb on + strand, within Ac3H11_1079at 11.060 kb on + strand, within Ac3H11_1079at 11.060 kb on + strand, within Ac3H11_1079at 11.061 kb on - strand, within Ac3H11_1079at 11.061 kb on - strand, within Ac3H11_1079at 11.061 kb on - strand, within Ac3H11_1079at 11.061 kb on - strand, within Ac3H11_1079at 11.061 kb on - strand, within Ac3H11_1079at 11.061 kb on - strand, within Ac3H11_1079at 11.061 kb on - strand, within Ac3H11_1079at 11.198 kb on + strand, within Ac3H11_1079at 11.198 kb on + strand, within Ac3H11_1079at 11.198 kb on + strand, within Ac3H11_1079at 11.198 kb on + strand, within Ac3H11_1079at 11.198 kb on + strand, within Ac3H11_1079at 11.198 kb on + strand, within Ac3H11_1079at 11.198 kb on + strand, within Ac3H11_1079at 11.198 kb on + strand, within Ac3H11_1079at 11.199 kb on - strand, within Ac3H11_1079at 11.211 kb on - strand, within Ac3H11_1079at 11.322 kb on + strand, within Ac3H11_1079at 11.322 kb on + strand, within Ac3H11_1079at 11.322 kb on + strand, within Ac3H11_1079at 11.399 kb on + strand, within Ac3H11_1079at 11.399 kb on + strand, within Ac3H11_1079at 11.400 kb on - strand, within Ac3H11_1079at 11.501 kb on + strand, within Ac3H11_1079at 11.501 kb on + strand, within Ac3H11_1079at 11.502 kb on - strand, within Ac3H11_1079at 11.502 kb on - strand, within Ac3H11_1079at 11.502 kb on - strand, within Ac3H11_1079at 11.615 kb on + strand, within Ac3H11_1079at 11.616 kb on - strand, within Ac3H11_1079at 11.648 kb on + strand, within Ac3H11_1079at 11.648 kb on + strand, within Ac3H11_1079at 11.648 kb on + strand, within Ac3H11_1079at 11.649 kb on - strand, within Ac3H11_1079at 11.649 kb on - strand, within Ac3H11_1079at 11.649 kb on - strand, within Ac3H11_1079at 11.649 kb on - strand, within Ac3H11_1079at 11.649 kb on - strand, within Ac3H11_1079at 11.649 kb on - strand, within Ac3H11_1079at 11.771 kb on + strand, within Ac3H11_1079at 11.771 kb on + strand, within Ac3H11_1079at 11.771 kb on + strand, within Ac3H11_1079at 11.771 kb on + strand, within Ac3H11_1079at 11.771 kb on + strand, within Ac3H11_1079at 11.772 kb on - strand, within Ac3H11_1079at 11.772 kb on - strand, within Ac3H11_1079at 11.772 kb on - strand, within Ac3H11_1079at 11.772 kb on - strand, within Ac3H11_1079at 11.772 kb on - strand, within Ac3H11_1079at 11.772 kb on - strand, within Ac3H11_1079at 11.772 kb on - strand, within Ac3H11_1079at 11.807 kb on + strand, within Ac3H11_1079at 11.910 kb on + strand, within Ac3H11_1079at 11.911 kb on - strand, within Ac3H11_1079at 12.047 kb on + strand, within Ac3H11_1079at 12.068 kb on + strand, within Ac3H11_1079at 12.068 kb on + strand, within Ac3H11_1079at 12.068 kb on + strand, within Ac3H11_1079at 12.068 kb on + strand, within Ac3H11_1079at 12.311 kb on + strand, within Ac3H11_1079at 12.311 kb on + strand, within Ac3H11_1079at 12.311 kb on + strand, within Ac3H11_1079at 12.311 kb on + strand, within Ac3H11_1079at 12.312 kb on - strand, within Ac3H11_1079at 12.312 kb on - strand, within Ac3H11_1079at 12.566 kb on + strandat 12.566 kb on + strandat 12.566 kb on + strandat 12.566 kb on + strandat 12.567 kb on - strandat 12.567 kb on - strandat 12.612 kb on - strandat 12.612 kb on - strandat 12.612 kb on - strandat 12.612 kb on - strandat 12.612 kb on - strandat 12.841 kb on - strand, within Ac3H11_1080at 12.947 kb on - strandat 13.397 kb on - strand, within Ac3H11_1081at 13.606 kb on - strand, within Ac3H11_1081

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.000025 mg/ml
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9,487 + +0.2
9,488 - -0.7
9,488 - -0.7
9,531 - +0.2
9,597 + +0.2
9,598 - -0.5
9,598 - +0.1
9,598 - -0.7
10,355 + +4.2
10,355 + -1.1
10,355 + -0.4
10,355 + -0.3
10,356 - +0.4
10,356 - -0.5
10,356 - -0.2
10,544 + -0.6
10,544 + +0.4
10,544 + -0.1
10,545 - -0.0
10,545 - +0.2
10,545 - +0.2
10,545 - +1.6
10,619 + +0.5
10,619 + +1.0
10,620 - +1.1
10,694 + Ac3H11_1079 0.10 +0.3
10,694 + Ac3H11_1079 0.10 -0.3
10,694 + Ac3H11_1079 0.10 +0.3
10,695 - Ac3H11_1079 0.10 +0.4
10,695 - Ac3H11_1079 0.10 +1.0
10,829 + Ac3H11_1079 0.16 +0.6
10,926 + Ac3H11_1079 0.20 +0.4
10,943 + Ac3H11_1079 0.21 +0.3
10,943 + Ac3H11_1079 0.21 +3.0
10,943 + Ac3H11_1079 0.21 +0.4
10,943 + Ac3H11_1079 0.21 +1.3
10,943 + Ac3H11_1079 0.21 +0.8
10,943 + Ac3H11_1079 0.21 +0.6
10,943 + Ac3H11_1079 0.21 +0.8
10,943 + Ac3H11_1079 0.21 -0.0
10,943 + Ac3H11_1079 0.21 +0.8
10,943 + Ac3H11_1079 0.21 +1.0
10,943 + Ac3H11_1079 0.21 +0.1
10,943 + Ac3H11_1079 0.21 +0.2
10,943 + Ac3H11_1079 0.21 -0.2
10,944 - Ac3H11_1079 0.21 -2.4
10,944 - Ac3H11_1079 0.21 +0.5
10,944 - Ac3H11_1079 0.21 +0.7
10,944 - Ac3H11_1079 0.21 +0.8
10,944 - Ac3H11_1079 0.21 -0.3
10,944 - Ac3H11_1079 0.21 +0.7
10,944 - Ac3H11_1079 0.21 +1.0
10,944 - Ac3H11_1079 0.21 +1.4
10,944 - Ac3H11_1079 0.21 +1.1
10,944 - Ac3H11_1079 0.21 -0.4
10,944 - Ac3H11_1079 0.21 +0.3
10,944 - Ac3H11_1079 0.21 +2.0
10,944 - Ac3H11_1079 0.21 +0.5
10,944 - Ac3H11_1079 0.21 +0.6
11,000 + Ac3H11_1079 0.23 +0.4
11,001 - Ac3H11_1079 0.23 +0.8
11,060 + Ac3H11_1079 0.26 +1.0
11,060 + Ac3H11_1079 0.26 +0.1
11,060 + Ac3H11_1079 0.26 +0.5
11,060 + Ac3H11_1079 0.26 +0.3
11,060 + Ac3H11_1079 0.26 +0.7
11,060 + Ac3H11_1079 0.26 +0.5
11,061 - Ac3H11_1079 0.26 +0.9
11,061 - Ac3H11_1079 0.26 +0.5
11,061 - Ac3H11_1079 0.26 +0.6
11,061 - Ac3H11_1079 0.26 +0.7
11,061 - Ac3H11_1079 0.26 +0.1
11,061 - Ac3H11_1079 0.26 +0.6
11,061 - Ac3H11_1079 0.26 +0.3
11,198 + Ac3H11_1079 0.32 +0.9
11,198 + Ac3H11_1079 0.32 -0.1
11,198 + Ac3H11_1079 0.32 +0.7
11,198 + Ac3H11_1079 0.32 +0.2
11,198 + Ac3H11_1079 0.32 +0.6
11,198 + Ac3H11_1079 0.32 +1.3
11,198 + Ac3H11_1079 0.32 +0.4
11,198 + Ac3H11_1079 0.32 -0.0
11,199 - Ac3H11_1079 0.32 +0.8
11,211 - Ac3H11_1079 0.33 +0.1
11,322 + Ac3H11_1079 0.37 +1.6
11,322 + Ac3H11_1079 0.37 +1.1
11,322 + Ac3H11_1079 0.37 +0.4
11,399 + Ac3H11_1079 0.41 +1.5
11,399 + Ac3H11_1079 0.41 -0.0
11,400 - Ac3H11_1079 0.41 +0.7
11,501 + Ac3H11_1079 0.45 +1.0
11,501 + Ac3H11_1079 0.45 +0.8
11,502 - Ac3H11_1079 0.45 +2.2
11,502 - Ac3H11_1079 0.45 +0.5
11,502 - Ac3H11_1079 0.45 +0.6
11,615 + Ac3H11_1079 0.50 +0.1
11,616 - Ac3H11_1079 0.50 +0.8
11,648 + Ac3H11_1079 0.52 +0.7
11,648 + Ac3H11_1079 0.52 +0.4
11,648 + Ac3H11_1079 0.52 +0.9
11,649 - Ac3H11_1079 0.52 -0.8
11,649 - Ac3H11_1079 0.52 +0.1
11,649 - Ac3H11_1079 0.52 +1.1
11,649 - Ac3H11_1079 0.52 +0.7
11,649 - Ac3H11_1079 0.52 +2.7
11,649 - Ac3H11_1079 0.52 +1.2
11,771 + Ac3H11_1079 0.57 +0.8
11,771 + Ac3H11_1079 0.57 +0.6
11,771 + Ac3H11_1079 0.57 +0.5
11,771 + Ac3H11_1079 0.57 +0.7
11,771 + Ac3H11_1079 0.57 -0.0
11,772 - Ac3H11_1079 0.57 +0.8
11,772 - Ac3H11_1079 0.57 -0.2
11,772 - Ac3H11_1079 0.57 +0.9
11,772 - Ac3H11_1079 0.57 -0.1
11,772 - Ac3H11_1079 0.57 +1.8
11,772 - Ac3H11_1079 0.57 +0.6
11,772 - Ac3H11_1079 0.57 +0.3
11,807 + Ac3H11_1079 0.58 +0.3
11,910 + Ac3H11_1079 0.63 +0.5
11,911 - Ac3H11_1079 0.63 +1.1
12,047 + Ac3H11_1079 0.69 +1.0
12,068 + Ac3H11_1079 0.70 +0.1
12,068 + Ac3H11_1079 0.70 +0.1
12,068 + Ac3H11_1079 0.70 +0.4
12,068 + Ac3H11_1079 0.70 +0.9
12,311 + Ac3H11_1079 0.80 +0.5
12,311 + Ac3H11_1079 0.80 +0.9
12,311 + Ac3H11_1079 0.80 +0.6
12,311 + Ac3H11_1079 0.80 +1.1
12,312 - Ac3H11_1079 0.80 +0.2
12,312 - Ac3H11_1079 0.80 +0.9
12,566 + +0.4
12,566 + +1.1
12,566 + +0.7
12,566 + +0.7
12,567 - +0.9
12,567 - +0.7
12,612 - +0.7
12,612 - +1.1
12,612 - +1.0
12,612 - +0.7
12,612 - +0.5
12,841 - Ac3H11_1080 0.31 -0.7
12,947 - +1.2
13,397 - Ac3H11_1081 0.30 +0.6
13,606 - Ac3H11_1081 0.44 +0.1

Or see this region's nucleotide sequence