Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1034

Experiment: Doxycycline hyclate 0.000025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1032 and Ac3H11_1033 overlap by 4 nucleotidesAc3H11_1033 and Ac3H11_1034 are separated by 92 nucleotidesAc3H11_1034 and Ac3H11_1035 are separated by 52 nucleotides Ac3H11_1032 - Truncated hemoglobins, at 151,344 to 151,793 _1032 Ac3H11_1033 - Nitric oxide-dependent regulator DnrN or NorA, at 151,790 to 152,560 _1033 Ac3H11_1034 - Nitrite-sensitive transcriptional repressor NsrR, at 152,653 to 153,192 _1034 Ac3H11_1035 - Transcriptional regulator, AraC family, at 153,245 to 154,267 _1035 Position (kb) 152 153 154Strain fitness (log2 ratio) -2 -1 0 1at 151.705 kb on + strand, within Ac3H11_1032at 151.706 kb on - strand, within Ac3H11_1032at 151.706 kb on - strand, within Ac3H11_1032at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.947 kb on + strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strand, within Ac3H11_1033at 151.948 kb on - strandat 151.948 kb on - strand, within Ac3H11_1033at 152.284 kb on + strand, within Ac3H11_1033at 152.285 kb on - strand, within Ac3H11_1033at 152.285 kb on - strand, within Ac3H11_1033at 152.285 kb on - strand, within Ac3H11_1033at 152.285 kb on - strand, within Ac3H11_1033at 152.285 kb on - strand, within Ac3H11_1033at 152.622 kb on + strandat 152.622 kb on + strandat 152.622 kb on + strandat 152.623 kb on - strandat 152.623 kb on - strandat 152.677 kb on + strandat 152.678 kb on - strandat 152.678 kb on - strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.698 kb on + strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.699 kb on - strandat 152.759 kb on - strand, within Ac3H11_1034at 153.011 kb on - strand, within Ac3H11_1034at 153.011 kb on - strand, within Ac3H11_1034at 153.011 kb on - strand, within Ac3H11_1034at 153.011 kb on - strand, within Ac3H11_1034at 153.975 kb on + strand, within Ac3H11_1035at 153.975 kb on + strand, within Ac3H11_1035at 153.975 kb on + strand, within Ac3H11_1035at 153.975 kb on + strand, within Ac3H11_1035at 153.976 kb on - strand, within Ac3H11_1035at 153.976 kb on - strand, within Ac3H11_1035at 153.976 kb on - strand, within Ac3H11_1035at 153.976 kb on - strand, within Ac3H11_1035at 153.976 kb on - strand, within Ac3H11_1035at 154.140 kb on + strand, within Ac3H11_1035at 154.140 kb on + strand, within Ac3H11_1035at 154.141 kb on - strand, within Ac3H11_1035at 154.141 kb on - strand, within Ac3H11_1035

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Per-strain Table

Position Strand Gene LocusTag Fraction Doxycycline hyclate 0.000025 mg/ml
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151,705 + Ac3H11_1032 0.80 -0.7
151,706 - Ac3H11_1032 0.80 +0.2
151,706 - Ac3H11_1032 0.80 -1.0
151,947 + Ac3H11_1033 0.20 +0.1
151,947 + Ac3H11_1033 0.20 -0.4
151,947 + Ac3H11_1033 0.20 +0.1
151,947 + Ac3H11_1033 0.20 +0.3
151,947 + Ac3H11_1033 0.20 +0.5
151,947 + Ac3H11_1033 0.20 -0.7
151,947 + Ac3H11_1033 0.20 +0.1
151,947 + Ac3H11_1033 0.20 +0.4
151,947 + Ac3H11_1033 0.20 -0.6
151,948 - Ac3H11_1033 0.20 +0.5
151,948 - Ac3H11_1033 0.20 -0.3
151,948 - Ac3H11_1033 0.20 -0.0
151,948 - Ac3H11_1033 0.20 +1.2
151,948 - Ac3H11_1033 0.20 -0.5
151,948 - Ac3H11_1033 0.20 -0.2
151,948 - Ac3H11_1033 0.20 +0.2
151,948 - Ac3H11_1033 0.20 +0.6
151,948 - Ac3H11_1033 0.20 -0.3
151,948 - -0.6
151,948 - Ac3H11_1033 0.20 +0.2
152,284 + Ac3H11_1033 0.64 -1.3
152,285 - Ac3H11_1033 0.64 -0.1
152,285 - Ac3H11_1033 0.64 -0.6
152,285 - Ac3H11_1033 0.64 -0.4
152,285 - Ac3H11_1033 0.64 +0.1
152,285 - Ac3H11_1033 0.64 +1.1
152,622 + +0.4
152,622 + -1.0
152,622 + -0.2
152,623 - -0.6
152,623 - +0.1
152,677 + -0.4
152,678 - -0.2
152,678 - +0.4
152,698 + -0.4
152,698 + +0.4
152,698 + -0.4
152,698 + +1.4
152,698 + +0.0
152,698 + +0.1
152,698 + -2.0
152,699 - +0.4
152,699 - -0.3
152,699 - -0.3
152,699 - +0.2
152,759 - Ac3H11_1034 0.20 +0.5
153,011 - Ac3H11_1034 0.66 -0.5
153,011 - Ac3H11_1034 0.66 -0.3
153,011 - Ac3H11_1034 0.66 -1.6
153,011 - Ac3H11_1034 0.66 -0.8
153,975 + Ac3H11_1035 0.71 -1.5
153,975 + Ac3H11_1035 0.71 +0.5
153,975 + Ac3H11_1035 0.71 +1.2
153,975 + Ac3H11_1035 0.71 +0.3
153,976 - Ac3H11_1035 0.71 -0.6
153,976 - Ac3H11_1035 0.71 +0.4
153,976 - Ac3H11_1035 0.71 -0.5
153,976 - Ac3H11_1035 0.71 -0.6
153,976 - Ac3H11_1035 0.71 +0.4
154,140 + Ac3H11_1035 0.87 +0.4
154,140 + Ac3H11_1035 0.87 +0.7
154,141 - Ac3H11_1035 0.88 +0.9
154,141 - Ac3H11_1035 0.88 +0.7

Or see this region's nucleotide sequence