Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004212

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004211 and ABIE53_004212 overlap by 4 nucleotidesABIE53_004212 and ABIE53_004213 are separated by 13 nucleotides ABIE53_004211: ABIE53_004211 - phosphoenolpyruvate-protein phosphotransferase, at 383,461 to 385,968 _004211 ABIE53_004212: ABIE53_004212 - 1-phosphofructokinase, at 385,965 to 387,020 _004212 ABIE53_004213: ABIE53_004213 - PTS system fructose-specific IIC component, at 387,034 to 388,869 _004213 Position (kb) 385 386 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 385.204 kb on + strand, within ABIE53_004211at 385.205 kb on - strand, within ABIE53_004211at 385.205 kb on - strand, within ABIE53_004211at 385.205 kb on - strand, within ABIE53_004211at 385.207 kb on - strand, within ABIE53_004211at 385.294 kb on + strand, within ABIE53_004211at 385.295 kb on - strand, within ABIE53_004211at 385.295 kb on - strand, within ABIE53_004211at 385.396 kb on + strand, within ABIE53_004211at 385.397 kb on - strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.621 kb on + strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.622 kb on - strand, within ABIE53_004211at 385.748 kb on + strandat 385.749 kb on - strandat 386.116 kb on - strand, within ABIE53_004212at 386.116 kb on - strand, within ABIE53_004212at 386.412 kb on + strand, within ABIE53_004212at 386.412 kb on + strand, within ABIE53_004212at 386.412 kb on + strand, within ABIE53_004212at 386.634 kb on + strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.635 kb on - strand, within ABIE53_004212at 386.743 kb on - strand, within ABIE53_004212at 386.743 kb on - strand, within ABIE53_004212at 386.743 kb on - strand, within ABIE53_004212at 386.743 kb on - strand, within ABIE53_004212at 387.018 kb on + strandat 387.018 kb on + strandat 387.018 kb on + strandat 387.018 kb on + strandat 387.019 kb on - strandat 387.057 kb on - strandat 387.057 kb on - strandat 387.213 kb on - strandat 387.213 kb on - strandat 387.364 kb on - strand, within ABIE53_004213at 387.615 kb on + strand, within ABIE53_004213at 387.655 kb on + strand, within ABIE53_004213at 387.655 kb on + strand, within ABIE53_004213at 387.655 kb on + strand, within ABIE53_004213at 387.655 kb on + strand, within ABIE53_004213at 387.656 kb on - strand, within ABIE53_004213at 387.656 kb on - strand, within ABIE53_004213at 387.656 kb on - strand, within ABIE53_004213at 387.952 kb on + strand, within ABIE53_004213at 387.952 kb on + strand, within ABIE53_004213at 387.952 kb on + strand, within ABIE53_004213at 387.952 kb on + strand, within ABIE53_004213at 387.952 kb on + strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.953 kb on - strand, within ABIE53_004213at 387.954 kb on - strand, within ABIE53_004213

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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385,204 + ABIE53_004211 0.69 +2.2
385,205 - ABIE53_004211 0.70 +1.4
385,205 - ABIE53_004211 0.70 +1.4
385,205 - ABIE53_004211 0.70 +0.3
385,207 - ABIE53_004211 0.70 -0.2
385,294 + ABIE53_004211 0.73 -2.2
385,295 - ABIE53_004211 0.73 -0.6
385,295 - ABIE53_004211 0.73 -1.2
385,396 + ABIE53_004211 0.77 +3.7
385,397 - ABIE53_004211 0.77 -1.8
385,621 + ABIE53_004211 0.86 -1.6
385,621 + ABIE53_004211 0.86 +0.2
385,621 + ABIE53_004211 0.86 +0.3
385,621 + ABIE53_004211 0.86 -0.4
385,621 + ABIE53_004211 0.86 +0.4
385,621 + ABIE53_004211 0.86 +1.1
385,622 - ABIE53_004211 0.86 -1.6
385,622 - ABIE53_004211 0.86 +0.7
385,622 - ABIE53_004211 0.86 -0.4
385,622 - ABIE53_004211 0.86 +0.4
385,622 - ABIE53_004211 0.86 -0.6
385,622 - ABIE53_004211 0.86 -2.3
385,748 + +2.6
385,749 - -0.6
386,116 - ABIE53_004212 0.14 -0.2
386,116 - ABIE53_004212 0.14 +2.3
386,412 + ABIE53_004212 0.42 +1.7
386,412 + ABIE53_004212 0.42 -1.8
386,412 + ABIE53_004212 0.42 -0.2
386,634 + ABIE53_004212 0.63 +0.4
386,635 - ABIE53_004212 0.63 -0.9
386,635 - ABIE53_004212 0.63 -3.7
386,635 - ABIE53_004212 0.63 +0.4
386,635 - ABIE53_004212 0.63 -1.5
386,635 - ABIE53_004212 0.63 -0.4
386,635 - ABIE53_004212 0.63 -1.4
386,635 - ABIE53_004212 0.63 +1.0
386,635 - ABIE53_004212 0.63 -0.1
386,743 - ABIE53_004212 0.74 -0.6
386,743 - ABIE53_004212 0.74 -1.0
386,743 - ABIE53_004212 0.74 -0.5
386,743 - ABIE53_004212 0.74 -1.4
387,018 + -1.2
387,018 + -0.9
387,018 + -1.4
387,018 + +0.6
387,019 - +1.0
387,057 - -1.5
387,057 - -2.9
387,213 - -1.6
387,213 - -1.2
387,364 - ABIE53_004213 0.18 -1.0
387,615 + ABIE53_004213 0.32 +0.5
387,655 + ABIE53_004213 0.34 +1.4
387,655 + ABIE53_004213 0.34 +0.3
387,655 + ABIE53_004213 0.34 -0.6
387,655 + ABIE53_004213 0.34 -0.4
387,656 - ABIE53_004213 0.34 -1.8
387,656 - ABIE53_004213 0.34 +0.9
387,656 - ABIE53_004213 0.34 +1.4
387,952 + ABIE53_004213 0.50 -2.7
387,952 + ABIE53_004213 0.50 +0.0
387,952 + ABIE53_004213 0.50 -0.1
387,952 + ABIE53_004213 0.50 +0.5
387,952 + ABIE53_004213 0.50 +4.4
387,953 - ABIE53_004213 0.50 -0.6
387,953 - ABIE53_004213 0.50 -0.3
387,953 - ABIE53_004213 0.50 +1.1
387,953 - ABIE53_004213 0.50 +1.2
387,953 - ABIE53_004213 0.50 +0.3
387,953 - ABIE53_004213 0.50 +1.7
387,953 - ABIE53_004213 0.50 +2.2
387,954 - ABIE53_004213 0.50 -0.6

Or see this region's nucleotide sequence