Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003324

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,740,837	+				-3.5
3,740,887	+				-2.8
3,740,887	+				-2.9
3,740,888	-				-1.4
3,740,888	-				-0.8
3,740,908	+				-1.6
3,740,908	+				-3.3
3,740,908	+				-1.9
3,740,908	+				+1.2
3,740,908	+				-4.6
3,740,908	+				-3.0
3,740,908	+				-0.4
3,740,909	-				-5.7
3,740,909	-				-1.4
3,740,909	-				-3.0
3,740,909	-				-1.8
3,740,909	-				-2.2
3,740,962	+				-1.1
3,740,962	+				+0.2
3,740,962	+				+1.8
3,740,962	+				+2.2
3,740,962	+				+0.5
3,740,962	+				-1.2
3,740,962	+				-1.9
3,740,962	+				+1.1
3,740,962	+				-2.5
3,740,962	+				-0.8
3,740,962	+				+0.1
3,740,962	+				+1.0
3,740,963	-				+0.5
3,740,963	-				+0.2
3,740,963	-				-2.7
3,740,963	-				-3.1
3,740,963	-				+0.2
3,740,963	-				+2.4
3,740,963	-				+1.2
3,740,963	-				-0.7
3,740,963	-				-1.1
3,740,963	-				-0.5
3,740,963	-				+0.6
3,740,963	-				-0.4
3,740,963	-				+0.3
3,740,963	-				-1.2
3,740,963	-				-1.9
3,740,963	-				+1.1
3,740,963	-				-0.5
3,740,963	-				-1.9
3,741,055	+				+1.0
3,741,055	+				+1.2
3,741,055	+				-1.1
3,741,056	-				-0.8
3,741,056	-				-0.2
3,741,056	-				-1.8
3,741,093	+				-1.6
3,741,093	+				-1.2
3,741,094	-				-1.2
3,741,094	-				+0.2
3,741,094	-				-0.4
3,741,100	+				-0.4
3,741,188	+				+0.5
3,741,188	+				-0.8
3,741,189	-				-0.9
3,741,189	-				+0.3
3,741,189	-				+0.2
3,741,189	-				-1.1
3,741,425	+		ABIE53_003322	0.58	-0.4
3,741,425	+		ABIE53_003322	0.58	-1.6
3,741,425	+		ABIE53_003322	0.58	-0.3
3,741,425	+		ABIE53_003322	0.58	+1.7
3,741,425	+		ABIE53_003322	0.58	+0.4
3,741,425	+		ABIE53_003322	0.58	+0.5
3,741,425	+		ABIE53_003322	0.58	+0.6
3,741,425	+		ABIE53_003322	0.58	-1.1
3,741,425	+		ABIE53_003322	0.58	+0.9
3,741,425	+		ABIE53_003322	0.58	+1.2
3,741,426	-		ABIE53_003322	0.58	-0.1
3,741,426	-		ABIE53_003322	0.58	+0.6
3,741,426	-		ABIE53_003322	0.58	-1.9
3,741,426	-		ABIE53_003322	0.58	+1.2
3,741,426	-		ABIE53_003322	0.58	+0.3
3,741,426	-		ABIE53_003322	0.58	+1.6
3,741,426	-		ABIE53_003322	0.58	+1.7
3,741,426	-		ABIE53_003322	0.58	-1.3
3,741,426	-		ABIE53_003322	0.58	-1.1
3,741,426	-		ABIE53_003322	0.58	+0.7
3,741,426	-		ABIE53_003322	0.58	-0.0
3,741,429	+		ABIE53_003322	0.59	-0.3
3,741,429	+		ABIE53_003322	0.59	-1.0
3,741,429	+		ABIE53_003322	0.59	-0.5
3,741,429	+		ABIE53_003322	0.59	-2.4
3,741,429	+		ABIE53_003322	0.59	+0.2
3,741,429	+		ABIE53_003322	0.59	+0.5
3,741,430	-		ABIE53_003322	0.59	-1.1
3,741,430	-		ABIE53_003322	0.59	+1.2
3,741,430	-		ABIE53_003322	0.59	-1.2
3,741,430	-		ABIE53_003322	0.59	-0.8
3,741,430	-		ABIE53_003322	0.59	-2.2
3,741,520	+		ABIE53_003322	0.79	-0.4
3,741,520	+		ABIE53_003322	0.79	-0.2
3,741,520	+		ABIE53_003322	0.79	-0.6
3,741,520	+		ABIE53_003322	0.79	-0.5
3,741,520	+		ABIE53_003322	0.79	-1.1
3,741,520	+		ABIE53_003322	0.79	-0.4
3,741,520	+		ABIE53_003322	0.79	-1.1
3,741,520	+		ABIE53_003322	0.79	+0.5
3,741,521	-		ABIE53_003322	0.79	-0.8
3,741,521	-		ABIE53_003322	0.79	-0.7
3,741,521	-		ABIE53_003322	0.79	+0.2
3,741,521	-		ABIE53_003322	0.79	-1.1
3,741,521	-		ABIE53_003322	0.79	-0.4
3,741,521	-		ABIE53_003322	0.79	+0.4
3,741,647	-		ABIE53_003323	0.63	+0.5
3,741,647	-		ABIE53_003323	0.63	+1.9
3,741,647	-		ABIE53_003323	0.63	+1.2
3,741,647	-		ABIE53_003323	0.63	-1.1
3,741,647	-		ABIE53_003323	0.63	+1.0
3,741,647	-		ABIE53_003323	0.63	+2.5
3,741,647	-		ABIE53_003323	0.63	+0.0
3,741,647	-		ABIE53_003323	0.63	+1.2
3,741,685	+				+0.5
3,741,685	+				-0.3
3,741,686	-				-1.4
3,741,748	+				-0.4
3,741,748	+				+0.5
3,741,749	-				+1.7
3,741,749	-				+0.2
3,741,749	-				-1.4
3,741,749	-				+0.2
3,741,749	-				-0.4
3,741,811	+		ABIE53_003324	0.10	+0.5
3,741,844	+		ABIE53_003324	0.13	+1.2
3,741,976	+		ABIE53_003324	0.26	+1.1
3,742,133	+		ABIE53_003324	0.41	-1.0
3,742,133	+		ABIE53_003324	0.41	-2.1
3,742,133	+		ABIE53_003324	0.41	+0.4
3,742,133	+		ABIE53_003324	0.41	-0.1
3,742,133	+		ABIE53_003324	0.41	-0.3
3,742,133	+		ABIE53_003324	0.41	+0.4
3,742,133	+		ABIE53_003324	0.41	-3.5
3,742,133	+		ABIE53_003324	0.41	+1.8
3,742,133	+		ABIE53_003324	0.41	-3.4
3,742,133	+		ABIE53_003324	0.41	+1.0
3,742,133	+		ABIE53_003324	0.41	-2.0
3,742,134	-		ABIE53_003324	0.42	-0.0
3,742,134	-		ABIE53_003324	0.42	-0.0
3,742,134	-		ABIE53_003324	0.42	+1.3
3,742,134	-		ABIE53_003324	0.42	+0.5
3,742,134	-		ABIE53_003324	0.42	+2.1
3,742,134	-		ABIE53_003324	0.42	+0.1
3,742,134	-		ABIE53_003324	0.42	+0.8
3,742,223	+		ABIE53_003324	0.50	-1.2
3,742,224	-		ABIE53_003324	0.50	+0.9
3,742,272	+		ABIE53_003324	0.55	-0.3
3,742,272	+		ABIE53_003324	0.55	+0.8
3,742,272	+		ABIE53_003324	0.55	-0.5
3,742,272	+		ABIE53_003324	0.55	-2.4
3,742,272	+		ABIE53_003324	0.55	-0.4
3,742,272	+		ABIE53_003324	0.55	+0.1
3,742,272	+		ABIE53_003324	0.55	+0.3
3,742,272	+		ABIE53_003324	0.55	+0.0
3,742,272	+		ABIE53_003324	0.55	+0.0
3,742,272	+		ABIE53_003324	0.55	-1.6
3,742,272	+		ABIE53_003324	0.55	+0.2
3,742,273	-		ABIE53_003324	0.55	-1.0
3,742,273	-		ABIE53_003324	0.55	-0.4
3,742,273	-		ABIE53_003324	0.55	+1.2
3,742,273	-		ABIE53_003324	0.55	-0.4
3,742,273	-		ABIE53_003324	0.55	+1.5
3,742,273	-		ABIE53_003324	0.55	+0.3
3,742,273	-		ABIE53_003324	0.55	-0.1
3,742,273	-		ABIE53_003324	0.55	+1.8
3,742,273	-		ABIE53_003324	0.55	-1.4
3,742,273	-		ABIE53_003324	0.55	-0.6
3,742,273	-		ABIE53_003324	0.55	-1.0
3,742,273	-		ABIE53_003324	0.55	+1.8
3,742,273	-		ABIE53_003324	0.55	+0.2
3,742,273	-		ABIE53_003324	0.55	+2.3
3,742,273	-		ABIE53_003324	0.55	-1.1
3,742,273	-		ABIE53_003324	0.55	-0.0
3,742,273	-		ABIE53_003324	0.55	+0.7
3,742,273	-		ABIE53_003324	0.55	+3.2
3,742,273	-		ABIE53_003324	0.55	-1.0
3,742,276	+		ABIE53_003324	0.55	+1.2
3,742,276	+		ABIE53_003324	0.55	+0.2
3,742,276	+		ABIE53_003324	0.55	+1.7
3,742,276	+		ABIE53_003324	0.55	+0.4
3,742,276	+		ABIE53_003324	0.55	+0.2
3,742,276	+		ABIE53_003324	0.55	+0.0
3,742,276	+		ABIE53_003324	0.55	+1.0
3,742,277	-		ABIE53_003324	0.55	+0.2
3,742,277	-		ABIE53_003324	0.55	+0.4
3,742,277	-		ABIE53_003324	0.55	+0.6
3,742,277	-		ABIE53_003324	0.55	-1.8
3,742,277	-		ABIE53_003324	0.55	-0.8
3,742,277	-		ABIE53_003324	0.55	-1.1
3,742,277	-		ABIE53_003324	0.55	-0.1
3,742,277	-		ABIE53_003324	0.55	+1.6
3,742,277	-		ABIE53_003324	0.55	-0.8
3,742,277	-		ABIE53_003324	0.55	-1.6
3,742,277	-		ABIE53_003324	0.55	+0.8
3,742,375	+		ABIE53_003324	0.65	+1.4
3,742,376	-		ABIE53_003324	0.65	-1.4
3,742,376	-		ABIE53_003324	0.65	-1.2
3,742,376	-		ABIE53_003324	0.65	-1.1
3,742,438	-		ABIE53_003324	0.71	-1.4
3,742,460	-		ABIE53_003324	0.73	-0.4
3,742,460	-		ABIE53_003324	0.73	-1.4
3,742,495	+		ABIE53_003324	0.77	+0.3
3,742,496	-		ABIE53_003324	0.77	-0.5
3,742,496	-		ABIE53_003324	0.77	-0.1
3,742,496	-		ABIE53_003324	0.77	+1.2
3,742,498	+		ABIE53_003324	0.77	+1.2
3,742,498	+		ABIE53_003324	0.77	+0.2
3,742,499	-		ABIE53_003324	0.77	-0.4
3,742,499	-		ABIE53_003324	0.77	+0.5
3,742,788	+				-1.8
3,742,788	+				+0.9
3,742,788	+				+0.9
3,742,788	+				+0.5
3,742,788	+				-2.5
3,742,788	+				+0.5
3,742,788	+				-1.1
3,742,788	+				-2.0
3,742,789	-				+0.2
3,742,789	-				-0.4
3,742,789	-				+1.2
3,742,789	-				+0.1
3,742,789	-				+0.9
3,742,789	-				-0.4
3,742,789	-				-0.8
3,742,812	+				-1.1
3,742,812	+				-2.4
3,742,813	-				+1.2
3,742,813	-				+2.1
3,742,814	+				+0.1
3,742,815	-				+0.9
3,742,994	-				+1.3
3,743,164	+				-1.2
3,743,227	+				+1.5
3,743,227	+				-1.1
3,743,227	+				-0.0
3,743,228	-				-3.0
3,743,633	+		ABIE53_003325	0.32	-1.1
3,743,633	+		ABIE53_003325	0.32	+2.7
3,743,633	+		ABIE53_003325	0.32	+2.1
3,743,634	-		ABIE53_003325	0.32	-0.8
3,743,634	-		ABIE53_003325	0.32	-0.8
3,743,634	-		ABIE53_003325	0.32	-1.6
3,743,722	+		ABIE53_003325	0.37	+0.2
3,743,723	-		ABIE53_003325	0.37	+0.4
3,743,723	-		ABIE53_003325	0.37	+1.9
3,743,725	+		ABIE53_003325	0.37	-2.0
3,743,725	+		ABIE53_003325	0.37	-1.2
3,743,725	+		ABIE53_003325	0.37	+1.2
3,743,725	+		ABIE53_003325	0.37	-0.4
3,743,726	-		ABIE53_003325	0.37	-1.6
3,743,726	-		ABIE53_003325	0.37	-0.3
3,743,726	-		ABIE53_003325	0.37	-2.4
3,743,726	-		ABIE53_003325	0.37	-1.8