Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000498

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000497 and ABIE53_000498 are separated by 106 nucleotidesABIE53_000498 and ABIE53_000499 are separated by 473 nucleotides ABIE53_000497: ABIE53_000497 - hypothetical protein, at 535,020 to 536,561 _000497 ABIE53_000498: ABIE53_000498 - hypothetical protein, at 536,668 to 537,081 _000498 ABIE53_000499: ABIE53_000499 - NAD-dependent SIR2 family protein deacetylase, at 537,555 to 538,091 _000499 Position (kb) 536 537 538Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 535.707 kb on - strand, within ABIE53_000497at 535.725 kb on + strand, within ABIE53_000497at 535.725 kb on + strand, within ABIE53_000497at 535.725 kb on + strand, within ABIE53_000497at 535.889 kb on + strand, within ABIE53_000497at 535.889 kb on + strand, within ABIE53_000497at 535.889 kb on + strand, within ABIE53_000497at 535.889 kb on + strand, within ABIE53_000497at 535.889 kb on + strand, within ABIE53_000497at 535.889 kb on + strand, within ABIE53_000497at 535.890 kb on - strand, within ABIE53_000497at 535.890 kb on - strand, within ABIE53_000497at 535.890 kb on - strand, within ABIE53_000497at 535.899 kb on + strand, within ABIE53_000497at 535.919 kb on - strand, within ABIE53_000497at 535.919 kb on - strand, within ABIE53_000497at 536.015 kb on + strand, within ABIE53_000497at 536.015 kb on + strand, within ABIE53_000497at 536.015 kb on + strand, within ABIE53_000497at 536.016 kb on - strand, within ABIE53_000497at 536.031 kb on + strand, within ABIE53_000497at 536.032 kb on - strand, within ABIE53_000497at 536.032 kb on - strand, within ABIE53_000497at 536.040 kb on + strand, within ABIE53_000497at 536.058 kb on - strand, within ABIE53_000497at 536.116 kb on - strand, within ABIE53_000497at 536.145 kb on + strand, within ABIE53_000497at 536.145 kb on + strand, within ABIE53_000497at 536.145 kb on + strand, within ABIE53_000497at 536.146 kb on - strand, within ABIE53_000497at 536.177 kb on + strand, within ABIE53_000497at 536.177 kb on + strand, within ABIE53_000497at 536.177 kb on + strand, within ABIE53_000497at 536.178 kb on - strand, within ABIE53_000497at 536.178 kb on - strand, within ABIE53_000497at 536.178 kb on - strand, within ABIE53_000497at 536.178 kb on - strand, within ABIE53_000497at 536.178 kb on - strand, within ABIE53_000497at 536.178 kb on - strand, within ABIE53_000497at 536.178 kb on - strand, within ABIE53_000497at 536.213 kb on - strand, within ABIE53_000497at 536.238 kb on + strand, within ABIE53_000497at 536.238 kb on + strand, within ABIE53_000497at 536.238 kb on + strand, within ABIE53_000497at 536.238 kb on + strand, within ABIE53_000497at 536.238 kb on + strand, within ABIE53_000497at 536.238 kb on + strand, within ABIE53_000497at 536.238 kb on + strand, within ABIE53_000497at 536.239 kb on - strand, within ABIE53_000497at 536.239 kb on - strand, within ABIE53_000497at 536.239 kb on - strand, within ABIE53_000497at 536.239 kb on - strand, within ABIE53_000497at 536.250 kb on - strand, within ABIE53_000497at 536.306 kb on + strand, within ABIE53_000497at 536.306 kb on + strand, within ABIE53_000497at 536.306 kb on + strand, within ABIE53_000497at 536.307 kb on - strand, within ABIE53_000497at 536.307 kb on - strand, within ABIE53_000497at 536.347 kb on + strand, within ABIE53_000497at 536.347 kb on + strand, within ABIE53_000497at 536.348 kb on - strand, within ABIE53_000497at 536.532 kb on + strandat 536.611 kb on - strandat 536.611 kb on - strandat 536.689 kb on - strandat 536.689 kb on - strandat 536.689 kb on - strandat 536.882 kb on - strand, within ABIE53_000498at 536.882 kb on - strand, within ABIE53_000498at 536.896 kb on + strand, within ABIE53_000498at 536.896 kb on + strand, within ABIE53_000498at 536.896 kb on + strand, within ABIE53_000498at 536.897 kb on - strand, within ABIE53_000498at 536.897 kb on - strand, within ABIE53_000498at 536.897 kb on - strand, within ABIE53_000498at 536.897 kb on - strand, within ABIE53_000498at 536.897 kb on - strand, within ABIE53_000498at 536.897 kb on - strand, within ABIE53_000498at 536.898 kb on + strand, within ABIE53_000498at 536.899 kb on - strand, within ABIE53_000498at 536.899 kb on - strand, within ABIE53_000498at 536.899 kb on - strand, within ABIE53_000498at 536.911 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.988 kb on + strand, within ABIE53_000498at 536.989 kb on - strand, within ABIE53_000498at 536.989 kb on - strand, within ABIE53_000498at 536.989 kb on - strand, within ABIE53_000498at 536.989 kb on - strand, within ABIE53_000498at 536.989 kb on - strand, within ABIE53_000498at 536.989 kb on - strand, within ABIE53_000498at 536.989 kb on - strand, within ABIE53_000498at 536.989 kb on - strand, within ABIE53_000498at 537.016 kb on + strand, within ABIE53_000498at 537.016 kb on + strand, within ABIE53_000498at 537.017 kb on - strand, within ABIE53_000498at 537.079 kb on + strandat 537.079 kb on + strandat 537.080 kb on - strandat 537.080 kb on - strandat 537.080 kb on - strandat 537.080 kb on - strandat 537.082 kb on + strandat 537.082 kb on + strandat 537.272 kb on - strandat 537.399 kb on + strandat 537.399 kb on + strandat 537.400 kb on - strandat 537.639 kb on + strand, within ABIE53_000499at 537.881 kb on + strand, within ABIE53_000499at 537.881 kb on + strand, within ABIE53_000499at 537.881 kb on + strand, within ABIE53_000499at 537.881 kb on + strand, within ABIE53_000499at 537.881 kb on + strand, within ABIE53_000499at 537.882 kb on - strand, within ABIE53_000499at 537.882 kb on - strand, within ABIE53_000499at 537.882 kb on - strand, within ABIE53_000499at 537.882 kb on - strand, within ABIE53_000499at 537.882 kb on - strand, within ABIE53_000499at 537.882 kb on - strand, within ABIE53_000499at 537.882 kb on - strand, within ABIE53_000499at 537.882 kb on - strand, within ABIE53_000499

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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535,707 - ABIE53_000497 0.45 -3.5
535,725 + ABIE53_000497 0.46 +0.1
535,725 + ABIE53_000497 0.46 +1.1
535,725 + ABIE53_000497 0.46 +0.6
535,889 + ABIE53_000497 0.56 -1.2
535,889 + ABIE53_000497 0.56 +0.3
535,889 + ABIE53_000497 0.56 -0.2
535,889 + ABIE53_000497 0.56 -0.9
535,889 + ABIE53_000497 0.56 -3.0
535,889 + ABIE53_000497 0.56 -1.2
535,890 - ABIE53_000497 0.56 +1.1
535,890 - ABIE53_000497 0.56 -2.2
535,890 - ABIE53_000497 0.56 -3.2
535,899 + ABIE53_000497 0.57 -0.9
535,919 - ABIE53_000497 0.58 -1.5
535,919 - ABIE53_000497 0.58 +1.9
536,015 + ABIE53_000497 0.65 -0.5
536,015 + ABIE53_000497 0.65 +1.4
536,015 + ABIE53_000497 0.65 -2.1
536,016 - ABIE53_000497 0.65 -1.5
536,031 + ABIE53_000497 0.66 -0.5
536,032 - ABIE53_000497 0.66 -1.1
536,032 - ABIE53_000497 0.66 -0.4
536,040 + ABIE53_000497 0.66 +0.1
536,058 - ABIE53_000497 0.67 -1.8
536,116 - ABIE53_000497 0.71 +1.1
536,145 + ABIE53_000497 0.73 -1.9
536,145 + ABIE53_000497 0.73 +1.1
536,145 + ABIE53_000497 0.73 -3.5
536,146 - ABIE53_000497 0.73 -2.9
536,177 + ABIE53_000497 0.75 -0.9
536,177 + ABIE53_000497 0.75 +0.1
536,177 + ABIE53_000497 0.75 +1.9
536,178 - ABIE53_000497 0.75 -0.5
536,178 - ABIE53_000497 0.75 +2.1
536,178 - ABIE53_000497 0.75 -3.0
536,178 - ABIE53_000497 0.75 -0.7
536,178 - ABIE53_000497 0.75 -1.2
536,178 - ABIE53_000497 0.75 -2.1
536,178 - ABIE53_000497 0.75 +0.0
536,213 - ABIE53_000497 0.77 -1.2
536,238 + ABIE53_000497 0.79 -1.8
536,238 + ABIE53_000497 0.79 -0.2
536,238 + ABIE53_000497 0.79 -2.4
536,238 + ABIE53_000497 0.79 +1.6
536,238 + ABIE53_000497 0.79 -0.2
536,238 + ABIE53_000497 0.79 +0.6
536,238 + ABIE53_000497 0.79 -3.0
536,239 - ABIE53_000497 0.79 -0.2
536,239 - ABIE53_000497 0.79 +0.2
536,239 - ABIE53_000497 0.79 +1.1
536,239 - ABIE53_000497 0.79 +0.2
536,250 - ABIE53_000497 0.80 -0.1
536,306 + ABIE53_000497 0.83 -0.6
536,306 + ABIE53_000497 0.83 +0.1
536,306 + ABIE53_000497 0.83 -2.1
536,307 - ABIE53_000497 0.83 -1.2
536,307 - ABIE53_000497 0.83 -0.5
536,347 + ABIE53_000497 0.86 -1.2
536,347 + ABIE53_000497 0.86 -2.6
536,348 - ABIE53_000497 0.86 +0.1
536,532 + +1.5
536,611 - -3.0
536,611 - -3.7
536,689 - -3.4
536,689 - -2.4
536,689 - -2.2
536,882 - ABIE53_000498 0.52 -1.2
536,882 - ABIE53_000498 0.52 -0.5
536,896 + ABIE53_000498 0.55 -2.6
536,896 + ABIE53_000498 0.55 -0.9
536,896 + ABIE53_000498 0.55 +0.1
536,897 - ABIE53_000498 0.55 -2.5
536,897 - ABIE53_000498 0.55 -0.5
536,897 - ABIE53_000498 0.55 +0.1
536,897 - ABIE53_000498 0.55 +0.1
536,897 - ABIE53_000498 0.55 -0.1
536,897 - ABIE53_000498 0.55 -3.8
536,898 + ABIE53_000498 0.56 -0.9
536,899 - ABIE53_000498 0.56 +1.6
536,899 - ABIE53_000498 0.56 +0.3
536,899 - ABIE53_000498 0.56 +0.8
536,911 + ABIE53_000498 0.59 +1.2
536,988 + ABIE53_000498 0.77 -2.1
536,988 + ABIE53_000498 0.77 -2.2
536,988 + ABIE53_000498 0.77 +1.6
536,988 + ABIE53_000498 0.77 +0.1
536,988 + ABIE53_000498 0.77 +2.2
536,988 + ABIE53_000498 0.77 -0.1
536,988 + ABIE53_000498 0.77 -2.1
536,988 + ABIE53_000498 0.77 -0.8
536,988 + ABIE53_000498 0.77 -1.5
536,988 + ABIE53_000498 0.77 -1.2
536,988 + ABIE53_000498 0.77 -0.5
536,988 + ABIE53_000498 0.77 +0.8
536,988 + ABIE53_000498 0.77 -1.2
536,988 + ABIE53_000498 0.77 -0.2
536,989 - ABIE53_000498 0.78 +1.6
536,989 - ABIE53_000498 0.78 -2.0
536,989 - ABIE53_000498 0.78 +0.1
536,989 - ABIE53_000498 0.78 +0.1
536,989 - ABIE53_000498 0.78 +1.1
536,989 - ABIE53_000498 0.78 -0.9
536,989 - ABIE53_000498 0.78 -1.5
536,989 - ABIE53_000498 0.78 +2.8
537,016 + ABIE53_000498 0.84 -0.2
537,016 + ABIE53_000498 0.84 -1.5
537,017 - ABIE53_000498 0.84 -1.2
537,079 + -1.3
537,079 + +0.5
537,080 - +0.1
537,080 - +1.1
537,080 - +1.1
537,080 - -0.7
537,082 + -1.2
537,082 + +0.1
537,272 - -0.9
537,399 + +0.1
537,399 + +0.1
537,400 - -0.6
537,639 + ABIE53_000499 0.16 -0.4
537,881 + ABIE53_000499 0.61 -0.7
537,881 + ABIE53_000499 0.61 -1.9
537,881 + ABIE53_000499 0.61 -1.9
537,881 + ABIE53_000499 0.61 +3.5
537,881 + ABIE53_000499 0.61 -1.7
537,882 - ABIE53_000499 0.61 -0.7
537,882 - ABIE53_000499 0.61 -0.2
537,882 - ABIE53_000499 0.61 -0.5
537,882 - ABIE53_000499 0.61 -2.1
537,882 - ABIE53_000499 0.61 -1.2
537,882 - ABIE53_000499 0.61 -0.4
537,882 - ABIE53_000499 0.61 +1.7
537,882 - ABIE53_000499 0.61 +0.6

Or see this region's nucleotide sequence