Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000426

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000425 and ABIE53_000426 are separated by 90 nucleotidesABIE53_000426 and ABIE53_000427 are separated by 72 nucleotidesABIE53_000427 and ABIE53_000428 are separated by 57 nucleotides ABIE53_000425: ABIE53_000425 - 23S rRNA (cytosine1962-C5)-methyltransferase, at 460,348 to 461,550 _000425 ABIE53_000426: ABIE53_000426 - integrase/recombinase XerC, at 461,641 to 462,564 _000426 ABIE53_000427: ABIE53_000427 - uncharacterized protein YigA (DUF484 family), at 462,637 to 463,392 _000427 ABIE53_000428: ABIE53_000428 - diaminopimelate epimerase, at 463,450 to 464,352 _000428 Position (kb) 461 462 463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 460.676 kb on + strand, within ABIE53_000425at 460.850 kb on + strand, within ABIE53_000425at 460.850 kb on + strand, within ABIE53_000425at 460.851 kb on - strand, within ABIE53_000425at 460.851 kb on - strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.925 kb on + strand, within ABIE53_000425at 460.926 kb on - strand, within ABIE53_000425at 460.926 kb on - strand, within ABIE53_000425at 460.926 kb on - strand, within ABIE53_000425at 460.926 kb on - strand, within ABIE53_000425at 460.965 kb on - strand, within ABIE53_000425at 461.038 kb on + strand, within ABIE53_000425at 461.038 kb on + strand, within ABIE53_000425at 461.039 kb on - strand, within ABIE53_000425at 461.039 kb on - strand, within ABIE53_000425at 461.078 kb on + strand, within ABIE53_000425at 461.078 kb on + strand, within ABIE53_000425at 461.078 kb on + strand, within ABIE53_000425at 461.078 kb on + strand, within ABIE53_000425at 461.078 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.201 kb on + strand, within ABIE53_000425at 461.202 kb on - strand, within ABIE53_000425at 461.202 kb on - strand, within ABIE53_000425at 461.202 kb on - strand, within ABIE53_000425at 461.202 kb on - strand, within ABIE53_000425at 461.486 kb on + strandat 461.486 kb on + strandat 461.486 kb on + strandat 461.487 kb on - strandat 461.487 kb on - strandat 461.487 kb on - strandat 461.487 kb on - strandat 461.539 kb on - strandat 461.544 kb on + strandat 461.544 kb on + strandat 461.544 kb on + strandat 461.545 kb on - strandat 461.620 kb on + strandat 461.621 kb on - strandat 461.621 kb on - strandat 461.621 kb on - strandat 461.678 kb on + strandat 461.714 kb on + strandat 461.714 kb on + strandat 461.714 kb on + strandat 461.715 kb on - strandat 462.326 kb on + strand, within ABIE53_000426at 462.327 kb on - strand, within ABIE53_000426at 462.411 kb on + strand, within ABIE53_000426at 462.536 kb on + strandat 462.536 kb on + strandat 462.536 kb on + strandat 462.537 kb on - strandat 462.537 kb on - strandat 462.537 kb on - strandat 462.927 kb on - strand, within ABIE53_000427at 462.998 kb on + strand, within ABIE53_000427at 462.999 kb on - strand, within ABIE53_000427at 462.999 kb on - strand, within ABIE53_000427at 463.089 kb on - strand, within ABIE53_000427at 463.332 kb on - strandat 463.332 kb on - strandat 463.332 kb on - strandat 463.375 kb on - strandat 463.375 kb on - strandat 463.375 kb on - strandat 463.414 kb on + strandat 463.414 kb on + strandat 463.414 kb on + strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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460,676 + ABIE53_000425 0.27 +1.1
460,850 + ABIE53_000425 0.42 +0.5
460,850 + ABIE53_000425 0.42 -2.5
460,851 - ABIE53_000425 0.42 -3.1
460,851 - ABIE53_000425 0.42 -0.7
460,925 + ABIE53_000425 0.48 -0.2
460,925 + ABIE53_000425 0.48 +0.1
460,925 + ABIE53_000425 0.48 -0.9
460,925 + ABIE53_000425 0.48 +0.9
460,925 + ABIE53_000425 0.48 -1.2
460,925 + ABIE53_000425 0.48 -2.9
460,925 + ABIE53_000425 0.48 -0.6
460,925 + ABIE53_000425 0.48 -1.6
460,926 - ABIE53_000425 0.48 +2.5
460,926 - ABIE53_000425 0.48 +0.5
460,926 - ABIE53_000425 0.48 +1.9
460,926 - ABIE53_000425 0.48 -0.5
460,965 - ABIE53_000425 0.51 +0.4
461,038 + ABIE53_000425 0.57 -1.2
461,038 + ABIE53_000425 0.57 -0.9
461,039 - ABIE53_000425 0.57 -1.9
461,039 - ABIE53_000425 0.57 +0.4
461,078 + ABIE53_000425 0.61 -3.4
461,078 + ABIE53_000425 0.61 +2.9
461,078 + ABIE53_000425 0.61 -0.1
461,078 + ABIE53_000425 0.61 +0.7
461,078 + ABIE53_000425 0.61 -3.0
461,201 + ABIE53_000425 0.71 +0.1
461,201 + ABIE53_000425 0.71 +1.9
461,201 + ABIE53_000425 0.71 +1.1
461,201 + ABIE53_000425 0.71 +0.2
461,201 + ABIE53_000425 0.71 +0.5
461,201 + ABIE53_000425 0.71 +1.1
461,201 + ABIE53_000425 0.71 -0.2
461,202 - ABIE53_000425 0.71 +0.7
461,202 - ABIE53_000425 0.71 -0.7
461,202 - ABIE53_000425 0.71 +0.8
461,202 - ABIE53_000425 0.71 -0.5
461,486 + -0.1
461,486 + -2.6
461,486 + -0.9
461,487 - +0.1
461,487 - -1.1
461,487 - -0.4
461,487 - +0.8
461,539 - -0.1
461,544 + +1.1
461,544 + -2.4
461,544 + -1.0
461,545 - -0.5
461,620 + +0.3
461,621 - -1.9
461,621 - -3.1
461,621 - -1.0
461,678 + -1.2
461,714 + -2.1
461,714 + -3.0
461,714 + -2.0
461,715 - -2.5
462,326 + ABIE53_000426 0.74 -1.7
462,327 - ABIE53_000426 0.74 +0.1
462,411 + ABIE53_000426 0.83 -0.9
462,536 + -1.5
462,536 + -2.6
462,536 + -2.9
462,537 - -0.6
462,537 - -2.4
462,537 - -0.9
462,927 - ABIE53_000427 0.38 -0.5
462,998 + ABIE53_000427 0.48 -1.2
462,999 - ABIE53_000427 0.48 -3.1
462,999 - ABIE53_000427 0.48 -4.3
463,089 - ABIE53_000427 0.60 -2.4
463,332 - +0.1
463,332 - +2.2
463,332 - -0.5
463,375 - -0.8
463,375 - +1.4
463,375 - +0.8
463,414 + -1.2
463,414 + -2.2
463,414 + -0.8
463,415 - -0.2
463,415 - +1.2
463,415 - +0.6
463,415 - +0.2
463,415 - -0.9
463,415 - +0.7

Or see this region's nucleotide sequence