Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000359 and ABIE53_000360 are separated by 56 nucleotides ABIE53_000360 and ABIE53_000361 overlap by 4 nucleotides ABIE53_000361 and ABIE53_000362 are separated by 8 nucleotides
ABIE53_000359: ABIE53_000359 - ethanolamine permease, at 385,819 to 387,222
_000359
ABIE53_000360: ABIE53_000360 - ethanolamine ammonia-lyase large subunit, at 387,279 to 388,673
_000360
ABIE53_000361: ABIE53_000361 - ethanolamine ammonia-lyase small subunit, at 388,670 to 389,485
_000361
ABIE53_000362: ABIE53_000362 - uncharacterized protein (DUF779 family), at 389,494 to 389,889
_000362
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 386.379 kb on + strand, within ABIE53_000359 at 386.539 kb on + strand, within ABIE53_000359 at 386.540 kb on - strand, within ABIE53_000359 at 386.659 kb on + strand, within ABIE53_000359 at 386.659 kb on + strand, within ABIE53_000359 at 386.660 kb on - strand, within ABIE53_000359 at 386.660 kb on - strand, within ABIE53_000359 at 386.660 kb on - strand, within ABIE53_000359 at 386.660 kb on - strand, within ABIE53_000359 at 386.660 kb on - strand, within ABIE53_000359 at 386.676 kb on + strand, within ABIE53_000359 at 386.677 kb on - strand, within ABIE53_000359 at 386.677 kb on - strand, within ABIE53_000359 at 386.677 kb on - strand, within ABIE53_000359 at 386.691 kb on + strand, within ABIE53_000359 at 386.691 kb on + strand, within ABIE53_000359 at 386.691 kb on + strand, within ABIE53_000359 at 386.691 kb on + strand, within ABIE53_000359 at 386.691 kb on + strand, within ABIE53_000359 at 386.691 kb on + strand, within ABIE53_000359 at 386.691 kb on + strand, within ABIE53_000359 at 386.691 kb on + strand, within ABIE53_000359 at 386.691 kb on + strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.692 kb on - strand, within ABIE53_000359 at 386.752 kb on + strand, within ABIE53_000359 at 386.788 kb on + strand, within ABIE53_000359 at 386.881 kb on + strand, within ABIE53_000359 at 386.881 kb on + strand, within ABIE53_000359 at 386.881 kb on + strand, within ABIE53_000359 at 386.882 kb on - strand, within ABIE53_000359 at 386.882 kb on - strand, within ABIE53_000359 at 386.882 kb on - strand, within ABIE53_000359 at 386.882 kb on - strand, within ABIE53_000359 at 386.882 kb on - strand, within ABIE53_000359 at 386.883 kb on + strand, within ABIE53_000359 at 386.883 kb on + strand, within ABIE53_000359 at 386.884 kb on - strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.965 kb on + strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.966 kb on - strand, within ABIE53_000359 at 386.967 kb on + strand, within ABIE53_000359 at 386.967 kb on + strand, within ABIE53_000359 at 386.967 kb on + strand, within ABIE53_000359 at 386.967 kb on + strand, within ABIE53_000359 at 386.967 kb on + strand, within ABIE53_000359 at 386.967 kb on + strand, within ABIE53_000359 at 386.968 kb on - strand, within ABIE53_000359 at 386.968 kb on - strand, within ABIE53_000359 at 387.096 kb on + strand at 387.096 kb on + strand at 387.096 kb on + strand at 387.097 kb on - strand at 387.097 kb on - strand at 387.097 kb on - strand at 387.097 kb on - strand at 387.097 kb on - strand at 387.097 kb on - strand at 387.103 kb on + strand at 387.103 kb on + strand at 387.103 kb on + strand at 387.103 kb on + strand at 387.104 kb on - strand at 387.104 kb on - strand at 387.104 kb on - strand at 387.104 kb on - strand at 387.104 kb on - strand at 387.104 kb on - strand at 387.108 kb on + strand at 387.108 kb on + strand at 387.109 kb on - strand at 387.154 kb on + strand at 387.161 kb on - strand at 387.161 kb on - strand at 387.261 kb on + strand at 387.261 kb on + strand at 387.274 kb on + strand at 387.274 kb on + strand at 387.275 kb on - strand at 387.285 kb on + strand at 387.285 kb on + strand at 387.285 kb on + strand at 387.285 kb on + strand at 387.285 kb on + strand at 387.285 kb on + strand at 387.285 kb on + strand at 387.285 kb on + strand at 387.286 kb on - strand at 387.286 kb on - strand at 387.286 kb on - strand at 387.286 kb on - strand at 387.287 kb on + strand at 387.287 kb on + strand at 387.288 kb on - strand at 387.288 kb on - strand at 387.313 kb on - strand at 387.440 kb on - strand, within ABIE53_000360 at 387.614 kb on + strand, within ABIE53_000360 at 387.614 kb on + strand, within ABIE53_000360 at 387.614 kb on + strand, within ABIE53_000360 at 387.614 kb on + strand, within ABIE53_000360 at 387.615 kb on - strand, within ABIE53_000360 at 387.825 kb on + strand, within ABIE53_000360 at 387.825 kb on + strand, within ABIE53_000360 at 387.825 kb on + strand, within ABIE53_000360 at 387.825 kb on + strand, within ABIE53_000360 at 387.826 kb on - strand, within ABIE53_000360 at 387.826 kb on - strand, within ABIE53_000360 at 387.924 kb on + strand, within ABIE53_000360 at 387.925 kb on - strand, within ABIE53_000360 at 388.070 kb on - strand, within ABIE53_000360 at 388.083 kb on + strand, within ABIE53_000360 at 388.083 kb on + strand, within ABIE53_000360 at 388.083 kb on + strand, within ABIE53_000360 at 388.083 kb on + strand, within ABIE53_000360 at 388.084 kb on - strand, within ABIE53_000360 at 388.084 kb on - strand, within ABIE53_000360 at 388.134 kb on + strand, within ABIE53_000360 at 388.134 kb on + strand, within ABIE53_000360 at 388.135 kb on - strand, within ABIE53_000360 at 388.215 kb on + strand, within ABIE53_000360 at 388.253 kb on + strand, within ABIE53_000360 at 388.253 kb on + strand, within ABIE53_000360 at 388.254 kb on - strand, within ABIE53_000360 at 388.282 kb on - strand, within ABIE53_000360 at 388.282 kb on - strand, within ABIE53_000360 at 388.282 kb on - strand, within ABIE53_000360 at 388.287 kb on + strand, within ABIE53_000360 at 388.288 kb on - strand, within ABIE53_000360 at 388.492 kb on - strand, within ABIE53_000360 at 388.521 kb on + strand, within ABIE53_000360 at 388.521 kb on + strand, within ABIE53_000360 at 388.522 kb on - strand, within ABIE53_000360 at 388.522 kb on - strand, within ABIE53_000360 at 388.522 kb on - strand, within ABIE53_000360 at 388.522 kb on - strand, within ABIE53_000360 at 388.534 kb on + strand at 388.773 kb on + strand, within ABIE53_000361 at 388.773 kb on + strand, within ABIE53_000361 at 388.913 kb on + strand, within ABIE53_000361 at 388.913 kb on + strand, within ABIE53_000361 at 389.059 kb on - strand, within ABIE53_000361 at 389.206 kb on + strand, within ABIE53_000361 at 389.206 kb on + strand, within ABIE53_000361 at 389.206 kb on + strand, within ABIE53_000361 at 389.207 kb on - strand, within ABIE53_000361 at 389.207 kb on - strand, within ABIE53_000361 at 389.231 kb on + strand, within ABIE53_000361 at 389.232 kb on - strand, within ABIE53_000361 at 389.232 kb on - strand, within ABIE53_000361 at 389.240 kb on + strand, within ABIE53_000361 at 389.241 kb on - strand, within ABIE53_000361 at 389.241 kb on - strand, within ABIE53_000361 at 389.241 kb on - strand, within ABIE53_000361 at 389.339 kb on + strand, within ABIE53_000361 at 389.339 kb on + strand, within ABIE53_000361 at 389.340 kb on - strand, within ABIE53_000361 at 389.340 kb on - strand, within ABIE53_000361 at 389.340 kb on - strand, within ABIE53_000361 at 389.478 kb on + strand at 389.479 kb on - strand at 389.483 kb on + strand at 389.607 kb on + strand, within ABIE53_000362 at 389.634 kb on + strand, within ABIE53_000362
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 386,379 + ABIE53_000359 0.40 -0.7 386,539 + ABIE53_000359 0.51 -1.3 386,540 - ABIE53_000359 0.51 +1.1 386,659 + ABIE53_000359 0.60 +1.8 386,659 + ABIE53_000359 0.60 +0.3 386,660 - ABIE53_000359 0.60 -0.7 386,660 - ABIE53_000359 0.60 -1.3 386,660 - ABIE53_000359 0.60 +0.6 386,660 - ABIE53_000359 0.60 -1.0 386,660 - ABIE53_000359 0.60 +0.1 386,676 + ABIE53_000359 0.61 -0.1 386,677 - ABIE53_000359 0.61 -2.4 386,677 - ABIE53_000359 0.61 -0.5 386,677 - ABIE53_000359 0.61 +0.4 386,691 + ABIE53_000359 0.62 -0.4 386,691 + ABIE53_000359 0.62 -1.9 386,691 + ABIE53_000359 0.62 -2.8 386,691 + ABIE53_000359 0.62 -3.0 386,691 + ABIE53_000359 0.62 +1.1 386,691 + ABIE53_000359 0.62 +0.3 386,691 + ABIE53_000359 0.62 -1.3 386,691 + ABIE53_000359 0.62 +0.6 386,691 + ABIE53_000359 0.62 +0.5 386,692 - ABIE53_000359 0.62 -1.3 386,692 - ABIE53_000359 0.62 +1.1 386,692 - ABIE53_000359 0.62 -2.4 386,692 - ABIE53_000359 0.62 +1.6 386,692 - ABIE53_000359 0.62 -0.1 386,692 - ABIE53_000359 0.62 +0.4 386,692 - ABIE53_000359 0.62 +0.0 386,692 - ABIE53_000359 0.62 +1.5 386,692 - ABIE53_000359 0.62 -1.7 386,692 - ABIE53_000359 0.62 +0.2 386,692 - ABIE53_000359 0.62 +0.1 386,692 - ABIE53_000359 0.62 +1.3 386,752 + ABIE53_000359 0.66 -0.4 386,788 + ABIE53_000359 0.69 -2.3 386,881 + ABIE53_000359 0.76 -2.1 386,881 + ABIE53_000359 0.76 -1.1 386,881 + ABIE53_000359 0.76 -0.3 386,882 - ABIE53_000359 0.76 -0.2 386,882 - ABIE53_000359 0.76 -1.6 386,882 - ABIE53_000359 0.76 +1.1 386,882 - ABIE53_000359 0.76 -1.4 386,882 - ABIE53_000359 0.76 -1.9 386,883 + ABIE53_000359 0.76 +0.1 386,883 + ABIE53_000359 0.76 +1.3 386,884 - ABIE53_000359 0.76 +0.1 386,965 + ABIE53_000359 0.82 +1.5 386,965 + ABIE53_000359 0.82 +2.3 386,965 + ABIE53_000359 0.82 -0.3 386,965 + ABIE53_000359 0.82 -1.7 386,965 + ABIE53_000359 0.82 -1.4 386,965 + ABIE53_000359 0.82 -0.5 386,965 + ABIE53_000359 0.82 -1.4 386,965 + ABIE53_000359 0.82 -0.5 386,965 + ABIE53_000359 0.82 +0.0 386,965 + ABIE53_000359 0.82 +1.8 386,965 + ABIE53_000359 0.82 +1.1 386,966 - ABIE53_000359 0.82 +4.1 386,966 - ABIE53_000359 0.82 +0.5 386,966 - ABIE53_000359 0.82 -2.6 386,966 - ABIE53_000359 0.82 -0.9 386,966 - ABIE53_000359 0.82 -1.3 386,966 - ABIE53_000359 0.82 +0.3 386,966 - ABIE53_000359 0.82 +1.1 386,966 - ABIE53_000359 0.82 -2.3 386,966 - ABIE53_000359 0.82 -0.9 386,966 - ABIE53_000359 0.82 -0.5 386,966 - ABIE53_000359 0.82 -1.1 386,966 - ABIE53_000359 0.82 -1.5 386,966 - ABIE53_000359 0.82 +1.5 386,966 - ABIE53_000359 0.82 -0.6 386,966 - ABIE53_000359 0.82 +0.8 386,967 + ABIE53_000359 0.82 +0.7 386,967 + ABIE53_000359 0.82 -1.5 386,967 + ABIE53_000359 0.82 -0.7 386,967 + ABIE53_000359 0.82 -0.9 386,967 + ABIE53_000359 0.82 -1.3 386,967 + ABIE53_000359 0.82 -0.2 386,968 - ABIE53_000359 0.82 +0.6 386,968 - ABIE53_000359 0.82 -0.4 387,096 + +0.1 387,096 + +1.0 387,096 + +0.2 387,097 - +1.7 387,097 - +0.9 387,097 - -0.5 387,097 - -1.7 387,097 - +3.7 387,097 - -1.3 387,103 + +0.3 387,103 + +0.1 387,103 + -0.2 387,103 + -2.5 387,104 - -1.3 387,104 - -1.3 387,104 - +0.6 387,104 - -1.7 387,104 - -0.6 387,104 - -2.8 387,108 + +0.9 387,108 + +0.6 387,109 - -0.1 387,154 + -1.0 387,161 - -1.1 387,161 - -0.2 387,261 + -1.0 387,261 + +1.4 387,274 + -0.3 387,274 + -3.0 387,275 - -0.2 387,285 + -0.6 387,285 + -2.1 387,285 + -1.3 387,285 + -0.2 387,285 + -1.5 387,285 + -0.8 387,285 + -1.9 387,285 + -1.7 387,286 - -0.6 387,286 - -1.7 387,286 - -0.8 387,286 - -2.1 387,287 + +1.1 387,287 + +2.1 387,288 - +0.3 387,288 - +0.8 387,313 - -0.5 387,440 - ABIE53_000360 0.12 -1.6 387,614 + ABIE53_000360 0.24 -0.9 387,614 + ABIE53_000360 0.24 +0.1 387,614 + ABIE53_000360 0.24 -0.7 387,614 + ABIE53_000360 0.24 -1.4 387,615 - ABIE53_000360 0.24 -0.5 387,825 + ABIE53_000360 0.39 +1.3 387,825 + ABIE53_000360 0.39 -0.3 387,825 + ABIE53_000360 0.39 -1.3 387,825 + ABIE53_000360 0.39 -0.5 387,826 - ABIE53_000360 0.39 -1.3 387,826 - ABIE53_000360 0.39 +0.1 387,924 + ABIE53_000360 0.46 +1.1 387,925 - ABIE53_000360 0.46 +0.9 388,070 - ABIE53_000360 0.57 -0.8 388,083 + ABIE53_000360 0.58 -0.7 388,083 + ABIE53_000360 0.58 +0.4 388,083 + ABIE53_000360 0.58 -0.3 388,083 + ABIE53_000360 0.58 -0.6 388,084 - ABIE53_000360 0.58 +1.2 388,084 - ABIE53_000360 0.58 -2.2 388,134 + ABIE53_000360 0.61 -1.6 388,134 + ABIE53_000360 0.61 -0.1 388,135 - ABIE53_000360 0.61 +1.3 388,215 + ABIE53_000360 0.67 +0.1 388,253 + ABIE53_000360 0.70 -0.8 388,253 + ABIE53_000360 0.70 -2.1 388,254 - ABIE53_000360 0.70 -0.8 388,282 - ABIE53_000360 0.72 -1.3 388,282 - ABIE53_000360 0.72 +1.1 388,282 - ABIE53_000360 0.72 -1.3 388,287 + ABIE53_000360 0.72 +1.8 388,288 - ABIE53_000360 0.72 +0.4 388,492 - ABIE53_000360 0.87 +0.1 388,521 + ABIE53_000360 0.89 -2.1 388,521 + ABIE53_000360 0.89 +0.6 388,522 - ABIE53_000360 0.89 -2.1 388,522 - ABIE53_000360 0.89 +0.1 388,522 - ABIE53_000360 0.89 -1.2 388,522 - ABIE53_000360 0.89 +1.7 388,534 + +0.1 388,773 + ABIE53_000361 0.13 -0.1 388,773 + ABIE53_000361 0.13 +0.3 388,913 + ABIE53_000361 0.30 +0.3 388,913 + ABIE53_000361 0.30 +0.7 389,059 - ABIE53_000361 0.48 -2.4 389,206 + ABIE53_000361 0.66 +0.4 389,206 + ABIE53_000361 0.66 +0.1 389,206 + ABIE53_000361 0.66 -1.0 389,207 - ABIE53_000361 0.66 -1.5 389,207 - ABIE53_000361 0.66 +1.7 389,231 + ABIE53_000361 0.69 +0.6 389,232 - ABIE53_000361 0.69 -3.0 389,232 - ABIE53_000361 0.69 -1.3 389,240 + ABIE53_000361 0.70 -2.3 389,241 - ABIE53_000361 0.70 -0.5 389,241 - ABIE53_000361 0.70 +0.1 389,241 - ABIE53_000361 0.70 -2.3 389,339 + ABIE53_000361 0.82 +0.1 389,339 + ABIE53_000361 0.82 -0.9 389,340 - ABIE53_000361 0.82 +0.1 389,340 - ABIE53_000361 0.82 +0.1 389,340 - ABIE53_000361 0.82 -0.9 389,478 + -1.3 389,479 - +0.8 389,483 + -1.4 389,607 + ABIE53_000362 0.29 +0.7 389,634 + ABIE53_000362 0.35 -0.5
Or see this region's nucleotide sequence