Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3022

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3021 and DvMF_3022 are separated by 132 nucleotidesDvMF_3022 and DvMF_3023 are separated by 502 nucleotides DvMF_3021: DvMF_3021 - aconitate hydratase (RefSeq), at 3,812,442 to 3,814,367 _3021 DvMF_3022: DvMF_3022 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,814,500 to 3,816,392 _3022 DvMF_3023: DvMF_3023 - ammonium transporter (RefSeq), at 3,816,895 to 3,818,472 _3023 Position (kb) 3814 3815 3816 3817Strain fitness (log2 ratio) -1 0 1at 3813.533 kb on - strand, within DvMF_3021at 3814.414 kb on + strandat 3814.511 kb on + strandat 3814.529 kb on + strandat 3814.529 kb on + strandat 3814.898 kb on + strand, within DvMF_3022at 3814.911 kb on - strand, within DvMF_3022at 3815.197 kb on + strand, within DvMF_3022at 3816.216 kb on - strandat 3816.320 kb on - strandat 3816.577 kb on + strandat 3817.074 kb on + strand, within DvMF_3023at 3817.080 kb on + strand, within DvMF_3023at 3817.346 kb on + strand, within DvMF_3023

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
remove
3,813,533 - DvMF_3021 0.57 +0.9
3,814,414 + -0.3
3,814,511 + -0.9
3,814,529 + -0.9
3,814,529 + -0.6
3,814,898 + DvMF_3022 0.21 -1.0
3,814,911 - DvMF_3022 0.22 -0.9
3,815,197 + DvMF_3022 0.37 -0.9
3,816,216 - -0.5
3,816,320 - -0.3
3,816,577 + -0.5
3,817,074 + DvMF_3023 0.11 -0.1
3,817,080 + DvMF_3023 0.12 -0.5
3,817,346 + DvMF_3023 0.29 -0.3

Or see this region's nucleotide sequence