Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3018

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3017 and DvMF_3018 overlap by 4 nucleotidesDvMF_3018 and DvMF_3019 are separated by 68 nucleotides DvMF_3017: DvMF_3017 - glycosyl transferase group 1 (RefSeq), at 3,806,565 to 3,807,647 _3017 DvMF_3018: DvMF_3018 - O-antigen polymerase (RefSeq), at 3,807,644 to 3,808,984 _3018 DvMF_3019: DvMF_3019 - glycosyl transferase group 1 (RefSeq), at 3,809,053 to 3,810,165 _3019 Position (kb) 3807 3808 3809Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3806.665 kb on + strandat 3806.797 kb on + strand, within DvMF_3017at 3806.797 kb on - strand, within DvMF_3017at 3806.845 kb on + strand, within DvMF_3017at 3806.869 kb on + strand, within DvMF_3017at 3806.877 kb on - strand, within DvMF_3017at 3806.877 kb on - strand, within DvMF_3017at 3806.987 kb on + strand, within DvMF_3017at 3807.196 kb on + strand, within DvMF_3017at 3807.216 kb on + strand, within DvMF_3017at 3807.533 kb on - strand, within DvMF_3017at 3807.689 kb on + strandat 3807.819 kb on + strand, within DvMF_3018at 3807.989 kb on - strand, within DvMF_3018at 3808.018 kb on + strand, within DvMF_3018at 3808.077 kb on + strand, within DvMF_3018at 3808.551 kb on + strand, within DvMF_3018at 3808.612 kb on + strand, within DvMF_3018at 3808.615 kb on - strand, within DvMF_3018at 3808.671 kb on - strand, within DvMF_3018at 3808.689 kb on - strand, within DvMF_3018at 3808.795 kb on + strand, within DvMF_3018at 3808.857 kb on + strandat 3809.265 kb on + strand, within DvMF_3019at 3809.311 kb on + strand, within DvMF_3019at 3809.311 kb on + strand, within DvMF_3019at 3809.311 kb on + strand, within DvMF_3019at 3809.311 kb on + strand, within DvMF_3019at 3809.319 kb on - strand, within DvMF_3019at 3809.319 kb on - strand, within DvMF_3019at 3809.319 kb on - strand, within DvMF_3019at 3809.319 kb on - strand, within DvMF_3019at 3809.323 kb on + strand, within DvMF_3019at 3809.368 kb on + strand, within DvMF_3019at 3809.550 kb on + strand, within DvMF_3019at 3809.701 kb on - strand, within DvMF_3019at 3809.729 kb on + strand, within DvMF_3019at 3809.847 kb on + strand, within DvMF_3019at 3809.847 kb on + strand, within DvMF_3019

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
remove
3,806,665 + -3.1
3,806,797 + DvMF_3017 0.21 -5.1
3,806,797 - DvMF_3017 0.21 -3.2
3,806,845 + DvMF_3017 0.26 -3.7
3,806,869 + DvMF_3017 0.28 -0.7
3,806,877 - DvMF_3017 0.29 -5.1
3,806,877 - DvMF_3017 0.29 -0.1
3,806,987 + DvMF_3017 0.39 -1.5
3,807,196 + DvMF_3017 0.58 -2.9
3,807,216 + DvMF_3017 0.60 -3.7
3,807,533 - DvMF_3017 0.89 -0.7
3,807,689 + -0.3
3,807,819 + DvMF_3018 0.13 -0.1
3,807,989 - DvMF_3018 0.26 -2.9
3,808,018 + DvMF_3018 0.28 -2.5
3,808,077 + DvMF_3018 0.32 -2.7
3,808,551 + DvMF_3018 0.68 -0.1
3,808,612 + DvMF_3018 0.72 -2.1
3,808,615 - DvMF_3018 0.72 -5.1
3,808,671 - DvMF_3018 0.77 -2.3
3,808,689 - DvMF_3018 0.78 -2.7
3,808,795 + DvMF_3018 0.86 -1.1
3,808,857 + -3.6
3,809,265 + DvMF_3019 0.19 -0.8
3,809,311 + DvMF_3019 0.23 -1.3
3,809,311 + DvMF_3019 0.23 -0.8
3,809,311 + DvMF_3019 0.23 -0.4
3,809,311 + DvMF_3019 0.23 -1.7
3,809,319 - DvMF_3019 0.24 -0.6
3,809,319 - DvMF_3019 0.24 -0.3
3,809,319 - DvMF_3019 0.24 -0.6
3,809,319 - DvMF_3019 0.24 -0.5
3,809,323 + DvMF_3019 0.24 -0.5
3,809,368 + DvMF_3019 0.28 -0.5
3,809,550 + DvMF_3019 0.45 -0.6
3,809,701 - DvMF_3019 0.58 -0.6
3,809,729 + DvMF_3019 0.61 -0.5
3,809,847 + DvMF_3019 0.71 -0.7
3,809,847 + DvMF_3019 0.71 -0.2

Or see this region's nucleotide sequence