Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3017

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3016 and DvMF_3017 are separated by 103 nucleotidesDvMF_3017 and DvMF_3018 overlap by 4 nucleotides DvMF_3016: DvMF_3016 - glycosyl transferase group 1 (RefSeq), at 3,805,340 to 3,806,461 _3016 DvMF_3017: DvMF_3017 - glycosyl transferase group 1 (RefSeq), at 3,806,565 to 3,807,647 _3017 DvMF_3018: DvMF_3018 - O-antigen polymerase (RefSeq), at 3,807,644 to 3,808,984 _3018 Position (kb) 3806 3807 3808Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3805.694 kb on - strand, within DvMF_3016at 3805.737 kb on - strand, within DvMF_3016at 3805.804 kb on - strand, within DvMF_3016at 3805.857 kb on - strand, within DvMF_3016at 3805.870 kb on + strand, within DvMF_3016at 3805.892 kb on + strand, within DvMF_3016at 3805.942 kb on - strand, within DvMF_3016at 3806.139 kb on - strand, within DvMF_3016at 3806.258 kb on - strand, within DvMF_3016at 3806.304 kb on + strand, within DvMF_3016at 3806.312 kb on - strand, within DvMF_3016at 3806.312 kb on - strand, within DvMF_3016at 3806.335 kb on + strand, within DvMF_3016at 3806.343 kb on - strand, within DvMF_3016at 3806.603 kb on + strandat 3806.665 kb on + strandat 3806.797 kb on + strand, within DvMF_3017at 3806.797 kb on - strand, within DvMF_3017at 3806.845 kb on + strand, within DvMF_3017at 3806.869 kb on + strand, within DvMF_3017at 3806.877 kb on - strand, within DvMF_3017at 3806.877 kb on - strand, within DvMF_3017at 3806.987 kb on + strand, within DvMF_3017at 3807.196 kb on + strand, within DvMF_3017at 3807.216 kb on + strand, within DvMF_3017at 3807.533 kb on - strand, within DvMF_3017at 3807.689 kb on + strandat 3807.819 kb on + strand, within DvMF_3018at 3807.989 kb on - strand, within DvMF_3018at 3808.018 kb on + strand, within DvMF_3018at 3808.077 kb on + strand, within DvMF_3018at 3808.551 kb on + strand, within DvMF_3018at 3808.612 kb on + strand, within DvMF_3018at 3808.615 kb on - strand, within DvMF_3018

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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3,805,694 - DvMF_3016 0.32 +0.3
3,805,737 - DvMF_3016 0.35 -0.7
3,805,804 - DvMF_3016 0.41 -1.4
3,805,857 - DvMF_3016 0.46 -0.7
3,805,870 + DvMF_3016 0.47 -1.9
3,805,892 + DvMF_3016 0.49 -2.1
3,805,942 - DvMF_3016 0.54 -0.4
3,806,139 - DvMF_3016 0.71 +0.2
3,806,258 - DvMF_3016 0.82 -1.7
3,806,304 + DvMF_3016 0.86 -1.5
3,806,312 - DvMF_3016 0.87 -1.5
3,806,312 - DvMF_3016 0.87 +0.1
3,806,335 + DvMF_3016 0.89 -0.1
3,806,343 - DvMF_3016 0.89 -1.6
3,806,603 + -2.2
3,806,665 + -3.1
3,806,797 + DvMF_3017 0.21 -5.1
3,806,797 - DvMF_3017 0.21 -3.2
3,806,845 + DvMF_3017 0.26 -3.7
3,806,869 + DvMF_3017 0.28 -0.7
3,806,877 - DvMF_3017 0.29 -5.1
3,806,877 - DvMF_3017 0.29 -0.1
3,806,987 + DvMF_3017 0.39 -1.5
3,807,196 + DvMF_3017 0.58 -2.9
3,807,216 + DvMF_3017 0.60 -3.7
3,807,533 - DvMF_3017 0.89 -0.7
3,807,689 + -0.3
3,807,819 + DvMF_3018 0.13 -0.1
3,807,989 - DvMF_3018 0.26 -2.9
3,808,018 + DvMF_3018 0.28 -2.5
3,808,077 + DvMF_3018 0.32 -2.7
3,808,551 + DvMF_3018 0.68 -0.1
3,808,612 + DvMF_3018 0.72 -2.1
3,808,615 - DvMF_3018 0.72 -5.1

Or see this region's nucleotide sequence