Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2815

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisD and DvMF_2815 are separated by 184 nucleotidesDvMF_2815 and DvMF_2816 are separated by 139 nucleotides DvMF_2814: hisD - histidinol dehydrogenase (RefSeq), at 3,558,242 to 3,559,546 hisD DvMF_2815: DvMF_2815 - phosphoribosylaminoimidazole-succinocarboxamide synthase (RefSeq), at 3,559,731 to 3,560,627 _2815 DvMF_2816: DvMF_2816 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,560,767 to 3,561,531 _2816 Position (kb) 3559 3560 3561Strain fitness (log2 ratio) -2 -1 0 1at 3558.798 kb on + strand, within hisDat 3558.803 kb on + strand, within hisDat 3558.822 kb on + strand, within hisDat 3559.041 kb on - strand, within hisDat 3559.339 kb on + strand, within hisDat 3559.570 kb on - strandat 3559.896 kb on + strand, within DvMF_2815at 3560.043 kb on + strand, within DvMF_2815at 3560.132 kb on - strand, within DvMF_2815at 3560.313 kb on - strand, within DvMF_2815

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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3,558,798 + hisD DvMF_2814 0.43 -1.2
3,558,803 + hisD DvMF_2814 0.43 -0.1
3,558,822 + hisD DvMF_2814 0.44 -0.6
3,559,041 - hisD DvMF_2814 0.61 -0.9
3,559,339 + hisD DvMF_2814 0.84 -0.2
3,559,570 - -0.0
3,559,896 + DvMF_2815 0.18 -2.6
3,560,043 + DvMF_2815 0.35 -0.5
3,560,132 - DvMF_2815 0.45 -2.4
3,560,313 - DvMF_2815 0.65 -2.3

Or see this region's nucleotide sequence