Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2703

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2702 and DvMF_2703 overlap by 4 nucleotidesDvMF_2703 and DvMF_2704 are separated by 5 nucleotidesDvMF_2704 and DvMF_2705 are separated by 13 nucleotides DvMF_2702: DvMF_2702 - ABC transporter related (RefSeq), at 3,418,698 to 3,419,981 _2702 DvMF_2703: DvMF_2703 - hypothetical protein (RefSeq), at 3,419,978 to 3,422,101 _2703 DvMF_2704: DvMF_2704 - glycosyl transferase family 2 (RefSeq), at 3,422,107 to 3,422,943 _2704 DvMF_2705: DvMF_2705 - glycosyl transferase family 2 (RefSeq), at 3,422,957 to 3,423,961 _2705 Position (kb) 3419 3420 3421 3422 3423Strain fitness (log2 ratio) -2 -1 0 1at 3419.855 kb on + strandat 3420.718 kb on - strand, within DvMF_2703at 3421.321 kb on + strand, within DvMF_2703at 3421.325 kb on + strand, within DvMF_2703at 3421.436 kb on + strand, within DvMF_2703at 3421.502 kb on + strand, within DvMF_2703at 3422.372 kb on - strand, within DvMF_2704

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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3,419,855 + +0.4
3,420,718 - DvMF_2703 0.35 -2.3
3,421,321 + DvMF_2703 0.63 -1.3
3,421,325 + DvMF_2703 0.63 +0.9
3,421,436 + DvMF_2703 0.69 -1.7
3,421,502 + DvMF_2703 0.72 -1.9
3,422,372 - DvMF_2704 0.32 -2.2

Or see this region's nucleotide sequence