Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2700

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2698 and DvMF_2699 overlap by 4 nucleotidesDvMF_2699 and DvMF_2700 overlap by 1 nucleotidesDvMF_2700 and DvMF_2701 are separated by 6 nucleotidesDvMF_2701 and DvMF_2702 are separated by 2 nucleotides DvMF_2698: DvMF_2698 - methyltransferase FkbM family (RefSeq), at 3,413,532 to 3,415,271 _2698 DvMF_2699: DvMF_2699 - glycosyl transferase family 11 (RefSeq), at 3,415,268 to 3,416,110 _2699 DvMF_2700: DvMF_2700 - glycosyl transferase family 2 (RefSeq), at 3,416,110 to 3,417,864 _2700 DvMF_2701: DvMF_2701 - ABC-2 type transporter (RefSeq), at 3,417,871 to 3,418,695 _2701 DvMF_2702: DvMF_2702 - ABC transporter related (RefSeq), at 3,418,698 to 3,419,981 _2702 Position (kb) 3416 3417 3418Strain fitness (log2 ratio) -3 -2 -1 0 1at 3415.160 kb on + strandat 3415.232 kb on + strandat 3415.744 kb on + strand, within DvMF_2699at 3416.348 kb on + strand, within DvMF_2700at 3417.128 kb on - strand, within DvMF_2700at 3417.141 kb on + strand, within DvMF_2700at 3417.584 kb on + strand, within DvMF_2700at 3417.599 kb on - strand, within DvMF_2700at 3417.685 kb on - strand, within DvMF_2700at 3418.688 kb on + strandat 3418.852 kb on + strand, within DvMF_2702

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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3,415,160 + -1.8
3,415,232 + -0.9
3,415,744 + DvMF_2699 0.56 -2.2
3,416,348 + DvMF_2700 0.14 -2.6
3,417,128 - DvMF_2700 0.58 -3.2
3,417,141 + DvMF_2700 0.59 -2.4
3,417,584 + DvMF_2700 0.84 -0.6
3,417,599 - DvMF_2700 0.85 -1.4
3,417,685 - DvMF_2700 0.90 -2.0
3,418,688 + -0.7
3,418,852 + DvMF_2702 0.12 -3.1

Or see this region's nucleotide sequence