Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2698

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2697 and DvMF_2698 are separated by 2 nucleotidesDvMF_2698 and DvMF_2699 overlap by 4 nucleotidesDvMF_2699 and DvMF_2700 overlap by 1 nucleotides DvMF_2697: DvMF_2697 - acyltransferase 3 (RefSeq), at 3,412,438 to 3,413,529 _2697 DvMF_2698: DvMF_2698 - methyltransferase FkbM family (RefSeq), at 3,413,532 to 3,415,271 _2698 DvMF_2699: DvMF_2699 - glycosyl transferase family 11 (RefSeq), at 3,415,268 to 3,416,110 _2699 DvMF_2700: DvMF_2700 - glycosyl transferase family 2 (RefSeq), at 3,416,110 to 3,417,864 _2700 Position (kb) 3413 3414 3415 3416Strain fitness (log2 ratio) -3 -2 -1 0 1at 3412.972 kb on + strand, within DvMF_2697at 3413.578 kb on - strandat 3413.837 kb on + strand, within DvMF_2698at 3413.975 kb on - strand, within DvMF_2698at 3414.303 kb on + strand, within DvMF_2698at 3414.403 kb on - strand, within DvMF_2698at 3414.456 kb on - strand, within DvMF_2698at 3414.798 kb on + strand, within DvMF_2698at 3415.160 kb on + strandat 3415.232 kb on + strandat 3415.744 kb on + strand, within DvMF_2699

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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3,412,972 + DvMF_2697 0.49 -0.5
3,413,578 - -2.2
3,413,837 + DvMF_2698 0.18 -2.4
3,413,975 - DvMF_2698 0.25 -1.9
3,414,303 + DvMF_2698 0.44 -3.4
3,414,403 - DvMF_2698 0.50 -1.1
3,414,456 - DvMF_2698 0.53 +0.9
3,414,798 + DvMF_2698 0.73 -3.0
3,415,160 + -1.8
3,415,232 + -0.9
3,415,744 + DvMF_2699 0.56 -2.2

Or see this region's nucleotide sequence