Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2440 and DvMF_2441 are separated by 14 nucleotides DvMF_2441 and DvMF_2442 are separated by 466 nucleotides DvMF_2442 and DvMF_R0068 are separated by 111 nucleotides DvMF_R0068 and DvMF_2443 are separated by 212 nucleotides DvMF_2443 and DvMF_2444 are separated by 6 nucleotides
DvMF_2440: DvMF_2440 - anti-sigma-factor antagonist (RefSeq), at 3,074,712 to 3,075,047
_2440
DvMF_2441: DvMF_2441 - putative anti-sigma regulatory factor, serine/threonine protein kinase (RefSeq), at 3,075,062 to 3,075,478
_2441
DvMF_2442: DvMF_2442 - Lytic transglycosylase catalytic (RefSeq), at 3,075,945 to 3,076,682
_2442
DvMF_R0068: DvMF_R0068 - tRNA-Phe (RefSeq), at 3,076,794 to 3,076,869
_R0068
DvMF_2443: DvMF_2443 - hypothetical protein (RefSeq), at 3,077,082 to 3,077,657
_2443
DvMF_2444: DvMF_2444 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,077,664 to 3,078,584
_2444
Position (kb)
3075
3076
3077 Strain fitness (log2 ratio)
-2
-1
0
1 at 3075.539 kb on + strand at 3075.763 kb on + strand at 3075.881 kb on - strand at 3075.881 kb on - strand at 3076.164 kb on + strand, within DvMF_2442 at 3076.513 kb on - strand, within DvMF_2442 at 3076.745 kb on - strand at 3076.747 kb on - strand at 3077.080 kb on + strand at 3077.136 kb on + strand at 3077.159 kb on - strand, within DvMF_2443 at 3077.238 kb on + strand, within DvMF_2443 at 3077.240 kb on - strand, within DvMF_2443 at 3077.252 kb on + strand, within DvMF_2443 at 3077.351 kb on - strand, within DvMF_2443 at 3077.496 kb on - strand, within DvMF_2443
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 % remove 3,075,539 + -0.8 3,075,763 + +0.1 3,075,881 - -0.1 3,075,881 - -0.3 3,076,164 + DvMF_2442 0.30 -1.3 3,076,513 - DvMF_2442 0.77 -1.3 3,076,745 - -0.6 3,076,747 - +0.0 3,077,080 + -0.1 3,077,136 + -2.3 3,077,159 - DvMF_2443 0.13 -1.2 3,077,238 + DvMF_2443 0.27 -1.1 3,077,240 - DvMF_2443 0.27 -1.7 3,077,252 + DvMF_2443 0.30 -1.3 3,077,351 - DvMF_2443 0.47 -0.8 3,077,496 - DvMF_2443 0.72 -1.4
Or see this region's nucleotide sequence