Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2442

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2440 and DvMF_2441 are separated by 14 nucleotidesDvMF_2441 and DvMF_2442 are separated by 466 nucleotidesDvMF_2442 and DvMF_R0068 are separated by 111 nucleotidesDvMF_R0068 and DvMF_2443 are separated by 212 nucleotidesDvMF_2443 and DvMF_2444 are separated by 6 nucleotides DvMF_2440: DvMF_2440 - anti-sigma-factor antagonist (RefSeq), at 3,074,712 to 3,075,047 _2440 DvMF_2441: DvMF_2441 - putative anti-sigma regulatory factor, serine/threonine protein kinase (RefSeq), at 3,075,062 to 3,075,478 _2441 DvMF_2442: DvMF_2442 - Lytic transglycosylase catalytic (RefSeq), at 3,075,945 to 3,076,682 _2442 DvMF_R0068: DvMF_R0068 - tRNA-Phe (RefSeq), at 3,076,794 to 3,076,869 _R0068 DvMF_2443: DvMF_2443 - hypothetical protein (RefSeq), at 3,077,082 to 3,077,657 _2443 DvMF_2444: DvMF_2444 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,077,664 to 3,078,584 _2444 Position (kb) 3075 3076 3077Strain fitness (log2 ratio) -2 -1 0 1at 3075.539 kb on + strandat 3075.763 kb on + strandat 3075.881 kb on - strandat 3075.881 kb on - strandat 3076.164 kb on + strand, within DvMF_2442at 3076.513 kb on - strand, within DvMF_2442at 3076.745 kb on - strandat 3076.747 kb on - strandat 3077.080 kb on + strandat 3077.136 kb on + strandat 3077.159 kb on - strand, within DvMF_2443at 3077.238 kb on + strand, within DvMF_2443at 3077.240 kb on - strand, within DvMF_2443at 3077.252 kb on + strand, within DvMF_2443at 3077.351 kb on - strand, within DvMF_2443at 3077.496 kb on - strand, within DvMF_2443

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
remove
3,075,539 + -0.8
3,075,763 + +0.1
3,075,881 - -0.1
3,075,881 - -0.3
3,076,164 + DvMF_2442 0.30 -1.3
3,076,513 - DvMF_2442 0.77 -1.3
3,076,745 - -0.6
3,076,747 - +0.0
3,077,080 + -0.1
3,077,136 + -2.3
3,077,159 - DvMF_2443 0.13 -1.2
3,077,238 + DvMF_2443 0.27 -1.1
3,077,240 - DvMF_2443 0.27 -1.7
3,077,252 + DvMF_2443 0.30 -1.3
3,077,351 - DvMF_2443 0.47 -0.8
3,077,496 - DvMF_2443 0.72 -1.4

Or see this region's nucleotide sequence