Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2357

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2356 and DvMF_2357 are separated by 13 nucleotidesDvMF_2357 and DvMF_2358 are separated by 274 nucleotides DvMF_2356: DvMF_2356 - transcriptional regulator, XRE family (RefSeq), at 2,975,651 to 2,976,217 _2356 DvMF_2357: DvMF_2357 - AMP-binding domain protein (RefSeq), at 2,976,231 to 2,977,883 _2357 DvMF_2358: DvMF_2358 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 2,978,158 to 2,979,636 _2358 Position (kb) 2976 2977 2978Strain fitness (log2 ratio) -1 0 1at 2975.330 kb on + strandat 2975.338 kb on - strandat 2975.338 kb on - strandat 2975.338 kb on - strandat 2975.467 kb on - strandat 2975.503 kb on + strandat 2975.720 kb on + strand, within DvMF_2356at 2975.819 kb on - strand, within DvMF_2356at 2975.831 kb on - strand, within DvMF_2356at 2975.838 kb on - strand, within DvMF_2356at 2975.970 kb on - strand, within DvMF_2356at 2976.006 kb on + strand, within DvMF_2356at 2976.212 kb on + strandat 2976.340 kb on + strandat 2976.385 kb on - strandat 2976.608 kb on - strand, within DvMF_2357at 2977.046 kb on + strand, within DvMF_2357at 2977.080 kb on + strand, within DvMF_2357at 2977.308 kb on - strand, within DvMF_2357at 2977.337 kb on + strand, within DvMF_2357at 2977.418 kb on + strand, within DvMF_2357at 2977.766 kb on - strandat 2978.134 kb on + strandat 2978.556 kb on - strand, within DvMF_2358at 2978.583 kb on - strand, within DvMF_2358at 2978.757 kb on - strand, within DvMF_2358at 2978.791 kb on + strand, within DvMF_2358at 2978.791 kb on + strand, within DvMF_2358at 2978.879 kb on - strand, within DvMF_2358

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,975,330 + -1.5
2,975,338 - -0.8
2,975,338 - -0.6
2,975,338 - -0.9
2,975,467 - +0.2
2,975,503 + -0.3
2,975,720 + DvMF_2356 0.12 -0.5
2,975,819 - DvMF_2356 0.30 -0.5
2,975,831 - DvMF_2356 0.32 -0.3
2,975,838 - DvMF_2356 0.33 -0.8
2,975,970 - DvMF_2356 0.56 -0.5
2,976,006 + DvMF_2356 0.63 -0.2
2,976,212 + -0.1
2,976,340 + +0.5
2,976,385 - +0.5
2,976,608 - DvMF_2357 0.23 -1.4
2,977,046 + DvMF_2357 0.49 -0.7
2,977,080 + DvMF_2357 0.51 -1.0
2,977,308 - DvMF_2357 0.65 -1.4
2,977,337 + DvMF_2357 0.67 -1.2
2,977,418 + DvMF_2357 0.72 -1.3
2,977,766 - -1.2
2,978,134 + -0.4
2,978,556 - DvMF_2358 0.27 -0.7
2,978,583 - DvMF_2358 0.29 -0.3
2,978,757 - DvMF_2358 0.41 -0.8
2,978,791 + DvMF_2358 0.43 -0.3
2,978,791 + DvMF_2358 0.43 -0.2
2,978,879 - DvMF_2358 0.49 -0.5

Or see this region's nucleotide sequence