Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2351

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2350 and DvMF_2351 are separated by 254 nucleotidesDvMF_2351 and DvMF_2352 are separated by 683 nucleotides DvMF_2350: DvMF_2350 - diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq), at 2,960,259 to 2,963,261 _2350 DvMF_2351: DvMF_2351 - aminodeoxychorismate lyase (RefSeq), at 2,963,516 to 2,965,378 _2351 DvMF_2352: DvMF_2352 - Holliday junction resolvase YqgF (RefSeq), at 2,966,062 to 2,966,490 _2352 Position (kb) 2963 2964 2965 2966Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2962.557 kb on - strand, within DvMF_2350at 2962.640 kb on + strand, within DvMF_2350at 2962.686 kb on + strand, within DvMF_2350at 2962.708 kb on - strand, within DvMF_2350at 2962.709 kb on - strand, within DvMF_2350at 2962.818 kb on - strand, within DvMF_2350at 2962.887 kb on + strand, within DvMF_2350at 2962.893 kb on - strand, within DvMF_2350at 2962.905 kb on + strand, within DvMF_2350at 2964.003 kb on + strand, within DvMF_2351at 2964.347 kb on - strand, within DvMF_2351at 2964.512 kb on + strand, within DvMF_2351at 2964.531 kb on + strand, within DvMF_2351at 2964.604 kb on + strand, within DvMF_2351at 2964.716 kb on - strand, within DvMF_2351at 2964.716 kb on - strand, within DvMF_2351at 2964.745 kb on - strand, within DvMF_2351at 2964.950 kb on + strand, within DvMF_2351at 2965.243 kb on - strandat 2965.604 kb on + strandat 2965.671 kb on - strandat 2965.968 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,962,557 - DvMF_2350 0.77 -0.2
2,962,640 + DvMF_2350 0.79 -0.5
2,962,686 + DvMF_2350 0.81 -1.1
2,962,708 - DvMF_2350 0.82 -0.4
2,962,709 - DvMF_2350 0.82 -1.0
2,962,818 - DvMF_2350 0.85 +0.5
2,962,887 + DvMF_2350 0.88 -0.5
2,962,893 - DvMF_2350 0.88 -0.4
2,962,905 + DvMF_2350 0.88 -0.3
2,964,003 + DvMF_2351 0.26 -0.8
2,964,347 - DvMF_2351 0.45 -3.2
2,964,512 + DvMF_2351 0.53 -4.7
2,964,531 + DvMF_2351 0.54 -3.5
2,964,604 + DvMF_2351 0.58 -4.3
2,964,716 - DvMF_2351 0.64 -4.4
2,964,716 - DvMF_2351 0.64 -5.0
2,964,745 - DvMF_2351 0.66 -4.3
2,964,950 + DvMF_2351 0.77 -4.7
2,965,243 - -4.2
2,965,604 + -3.2
2,965,671 - -1.2
2,965,968 + -2.9

Or see this region's nucleotide sequence