Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2307

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2306 and DvMF_2307 are separated by 182 nucleotidesDvMF_2307 and DvMF_2308 are separated by 407 nucleotides DvMF_2306: DvMF_2306 - carbamoyl-phosphate synthase, large subunit (RefSeq), at 2,896,618 to 2,899,854 _2306 DvMF_2307: DvMF_2307 - amidophosphoribosyltransferase (RefSeq), at 2,900,037 to 2,901,440 _2307 DvMF_2308: DvMF_2308 - KpsF/GutQ family protein (RefSeq), at 2,901,848 to 2,902,849 _2308 Position (kb) 2900 2901 2902Strain fitness (log2 ratio) -2 -1 0 1 2at 2899.087 kb on - strand, within DvMF_2306at 2899.104 kb on + strand, within DvMF_2306at 2899.352 kb on + strand, within DvMF_2306at 2899.559 kb on + strandat 2899.687 kb on - strandat 2899.793 kb on - strandat 2899.819 kb on - strandat 2899.824 kb on - strandat 2899.895 kb on - strandat 2900.172 kb on - strandat 2900.382 kb on - strand, within DvMF_2307at 2900.521 kb on - strand, within DvMF_2307at 2900.725 kb on + strand, within DvMF_2307at 2900.726 kb on - strand, within DvMF_2307at 2900.803 kb on + strand, within DvMF_2307at 2900.957 kb on + strand, within DvMF_2307at 2900.957 kb on - strand, within DvMF_2307at 2901.041 kb on + strand, within DvMF_2307at 2901.049 kb on - strand, within DvMF_2307at 2901.605 kb on - strandat 2901.672 kb on - strandat 2901.714 kb on - strandat 2901.714 kb on - strandat 2901.714 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,899,087 - DvMF_2306 0.76 -2.2
2,899,104 + DvMF_2306 0.77 -0.7
2,899,352 + DvMF_2306 0.84 -2.7
2,899,559 + -2.5
2,899,687 - -2.7
2,899,793 - +0.4
2,899,819 - -0.5
2,899,824 - -0.0
2,899,895 - -0.8
2,900,172 - -2.5
2,900,382 - DvMF_2307 0.25 -2.4
2,900,521 - DvMF_2307 0.34 -0.4
2,900,725 + DvMF_2307 0.49 -0.4
2,900,726 - DvMF_2307 0.49 -1.5
2,900,803 + DvMF_2307 0.55 -2.1
2,900,957 + DvMF_2307 0.66 -1.7
2,900,957 - DvMF_2307 0.66 -2.4
2,901,041 + DvMF_2307 0.72 -1.3
2,901,049 - DvMF_2307 0.72 -1.7
2,901,605 - -0.5
2,901,672 - +1.8
2,901,714 - -0.2
2,901,714 - -0.0
2,901,714 - -0.2

Or see this region's nucleotide sequence