Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2301

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2300 and DvMF_2301 are separated by 495 nucleotidesDvMF_2301 and DvMF_2302 are separated by 98 nucleotidesDvMF_2302 and DvMF_2303 are separated by 136 nucleotides DvMF_2300: DvMF_2300 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 2,888,613 to 2,891,423 _2300 DvMF_2301: DvMF_2301 - molybdenum cofactor biosynthesis protein C (RefSeq), at 2,891,919 to 2,892,410 _2301 DvMF_2302: DvMF_2302 - Dimethylmenaquinone methyltransferase (RefSeq), at 2,892,509 to 2,893,186 _2302 DvMF_2303: DvMF_2303 - esterase/lipase-like protein (RefSeq), at 2,893,323 to 2,894,333 _2303 Position (kb) 2891 2892 2893Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2891.074 kb on + strand, within DvMF_2300at 2891.074 kb on + strand, within DvMF_2300at 2891.074 kb on + strand, within DvMF_2300at 2891.082 kb on - strand, within DvMF_2300at 2891.082 kb on - strand, within DvMF_2300at 2891.082 kb on - strand, within DvMF_2300at 2891.082 kb on - strand, within DvMF_2300at 2891.227 kb on + strandat 2891.235 kb on - strandat 2891.258 kb on - strandat 2891.308 kb on + strandat 2891.313 kb on + strandat 2891.346 kb on - strandat 2891.425 kb on - strandat 2891.432 kb on + strandat 2891.452 kb on - strandat 2891.457 kb on - strandat 2891.475 kb on + strandat 2891.475 kb on + strandat 2891.483 kb on - strandat 2891.483 kb on - strandat 2891.825 kb on + strandat 2891.830 kb on + strandat 2891.830 kb on + strandat 2891.830 kb on + strandat 2891.838 kb on - strandat 2891.840 kb on + strandat 2892.080 kb on + strand, within DvMF_2301at 2892.186 kb on + strand, within DvMF_2301at 2892.308 kb on + strand, within DvMF_2301at 2892.320 kb on + strand, within DvMF_2301at 2892.328 kb on - strand, within DvMF_2301at 2892.328 kb on - strand, within DvMF_2301at 2892.565 kb on + strandat 2892.906 kb on + strand, within DvMF_2302at 2893.020 kb on + strand, within DvMF_2302at 2893.030 kb on - strand, within DvMF_2302at 2893.175 kb on - strandat 2893.257 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,891,074 + DvMF_2300 0.88 -0.6
2,891,074 + DvMF_2300 0.88 -0.7
2,891,074 + DvMF_2300 0.88 -0.5
2,891,082 - DvMF_2300 0.88 -0.7
2,891,082 - DvMF_2300 0.88 -1.1
2,891,082 - DvMF_2300 0.88 -0.8
2,891,082 - DvMF_2300 0.88 -0.3
2,891,227 + -1.2
2,891,235 - -0.2
2,891,258 - -0.9
2,891,308 + -0.6
2,891,313 + -0.6
2,891,346 - -0.2
2,891,425 - -0.8
2,891,432 + -0.6
2,891,452 - -0.2
2,891,457 - -0.8
2,891,475 + -0.5
2,891,475 + -0.8
2,891,483 - -0.3
2,891,483 - -0.4
2,891,825 + +0.0
2,891,830 + -2.5
2,891,830 + -2.2
2,891,830 + +0.4
2,891,838 - -1.0
2,891,840 + -3.7
2,892,080 + DvMF_2301 0.33 -3.8
2,892,186 + DvMF_2301 0.54 -0.2
2,892,308 + DvMF_2301 0.79 -2.5
2,892,320 + DvMF_2301 0.82 -2.0
2,892,328 - DvMF_2301 0.83 -1.5
2,892,328 - DvMF_2301 0.83 -1.1
2,892,565 + +0.1
2,892,906 + DvMF_2302 0.59 -0.6
2,893,020 + DvMF_2302 0.75 -0.7
2,893,030 - DvMF_2302 0.77 -0.1
2,893,175 - -0.6
2,893,257 + -0.6

Or see this region's nucleotide sequence