Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2300 and DvMF_2301 are separated by 495 nucleotides DvMF_2301 and DvMF_2302 are separated by 98 nucleotides DvMF_2302 and DvMF_2303 are separated by 136 nucleotides
DvMF_2300: DvMF_2300 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 2,888,613 to 2,891,423
_2300
DvMF_2301: DvMF_2301 - molybdenum cofactor biosynthesis protein C (RefSeq), at 2,891,919 to 2,892,410
_2301
DvMF_2302: DvMF_2302 - Dimethylmenaquinone methyltransferase (RefSeq), at 2,892,509 to 2,893,186
_2302
DvMF_2303: DvMF_2303 - esterase/lipase-like protein (RefSeq), at 2,893,323 to 2,894,333
_2303
Position (kb)
2891
2892
2893 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2891.074 kb on + strand, within DvMF_2300 at 2891.074 kb on + strand, within DvMF_2300 at 2891.074 kb on + strand, within DvMF_2300 at 2891.082 kb on - strand, within DvMF_2300 at 2891.082 kb on - strand, within DvMF_2300 at 2891.082 kb on - strand, within DvMF_2300 at 2891.082 kb on - strand, within DvMF_2300 at 2891.227 kb on + strand at 2891.235 kb on - strand at 2891.258 kb on - strand at 2891.308 kb on + strand at 2891.313 kb on + strand at 2891.346 kb on - strand at 2891.425 kb on - strand at 2891.432 kb on + strand at 2891.452 kb on - strand at 2891.457 kb on - strand at 2891.475 kb on + strand at 2891.475 kb on + strand at 2891.483 kb on - strand at 2891.483 kb on - strand at 2891.825 kb on + strand at 2891.830 kb on + strand at 2891.830 kb on + strand at 2891.830 kb on + strand at 2891.838 kb on - strand at 2891.840 kb on + strand at 2892.080 kb on + strand, within DvMF_2301 at 2892.186 kb on + strand, within DvMF_2301 at 2892.308 kb on + strand, within DvMF_2301 at 2892.320 kb on + strand, within DvMF_2301 at 2892.328 kb on - strand, within DvMF_2301 at 2892.328 kb on - strand, within DvMF_2301 at 2892.565 kb on + strand at 2892.906 kb on + strand, within DvMF_2302 at 2893.020 kb on + strand, within DvMF_2302 at 2893.030 kb on - strand, within DvMF_2302 at 2893.175 kb on - strand at 2893.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 % remove 2,891,074 + DvMF_2300 0.88 -0.6 2,891,074 + DvMF_2300 0.88 -0.7 2,891,074 + DvMF_2300 0.88 -0.5 2,891,082 - DvMF_2300 0.88 -0.7 2,891,082 - DvMF_2300 0.88 -1.1 2,891,082 - DvMF_2300 0.88 -0.8 2,891,082 - DvMF_2300 0.88 -0.3 2,891,227 + -1.2 2,891,235 - -0.2 2,891,258 - -0.9 2,891,308 + -0.6 2,891,313 + -0.6 2,891,346 - -0.2 2,891,425 - -0.8 2,891,432 + -0.6 2,891,452 - -0.2 2,891,457 - -0.8 2,891,475 + -0.5 2,891,475 + -0.8 2,891,483 - -0.3 2,891,483 - -0.4 2,891,825 + +0.0 2,891,830 + -2.5 2,891,830 + -2.2 2,891,830 + +0.4 2,891,838 - -1.0 2,891,840 + -3.7 2,892,080 + DvMF_2301 0.33 -3.8 2,892,186 + DvMF_2301 0.54 -0.2 2,892,308 + DvMF_2301 0.79 -2.5 2,892,320 + DvMF_2301 0.82 -2.0 2,892,328 - DvMF_2301 0.83 -1.5 2,892,328 - DvMF_2301 0.83 -1.1 2,892,565 + +0.1 2,892,906 + DvMF_2302 0.59 -0.6 2,893,020 + DvMF_2302 0.75 -0.7 2,893,030 - DvMF_2302 0.77 -0.1 2,893,175 - -0.6 2,893,257 + -0.6
Or see this region's nucleotide sequence