Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2277

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2276 and DvMF_2277 are separated by 4 nucleotidesDvMF_2277 and DvMF_2278 are separated by 335 nucleotides DvMF_2276: DvMF_2276 - hydrogenase formation HypD protein (RefSeq), at 2,862,570 to 2,863,667 _2276 DvMF_2277: DvMF_2277 - hydrogenase expression/formation protein HypE (RefSeq), at 2,863,672 to 2,864,697 _2277 DvMF_2278: DvMF_2278 - no description, at 2,865,033 to 2,866,383 _2278 Position (kb) 2863 2864 2865Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2862.888 kb on - strand, within DvMF_2276at 2863.268 kb on + strand, within DvMF_2276at 2863.374 kb on + strand, within DvMF_2276at 2864.224 kb on + strand, within DvMF_2277at 2864.902 kb on - strandat 2864.902 kb on - strandat 2864.902 kb on - strandat 2865.043 kb on + strandat 2865.206 kb on + strand, within DvMF_2278at 2865.214 kb on - strand, within DvMF_2278at 2865.316 kb on + strand, within DvMF_2278at 2865.620 kb on - strand, within DvMF_2278

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,862,888 - DvMF_2276 0.29 -1.7
2,863,268 + DvMF_2276 0.64 +0.9
2,863,374 + DvMF_2276 0.73 -0.7
2,864,224 + DvMF_2277 0.54 -1.7
2,864,902 - -0.8
2,864,902 - -0.4
2,864,902 - -0.4
2,865,043 + -0.6
2,865,206 + DvMF_2278 0.13 -2.8
2,865,214 - DvMF_2278 0.13 -3.0
2,865,316 + DvMF_2278 0.21 -4.8
2,865,620 - DvMF_2278 0.43 -3.0

Or see this region's nucleotide sequence