Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2275

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2274 and DvMF_2275 are separated by 79 nucleotidesDvMF_2275 and DvMF_2276 are separated by 388 nucleotides DvMF_2274: DvMF_2274 - Three-deoxy-D-manno-octulosonic-acid transferase domain protein (RefSeq), at 2,859,889 to 2,861,364 _2274 DvMF_2275: DvMF_2275 - metal dependent phosphohydrolase (RefSeq), at 2,861,444 to 2,862,181 _2275 DvMF_2276: DvMF_2276 - hydrogenase formation HypD protein (RefSeq), at 2,862,570 to 2,863,667 _2276 Position (kb) 2861 2862 2863Strain fitness (log2 ratio) -1 0 1at 2861.527 kb on - strand, within DvMF_2275at 2861.731 kb on + strand, within DvMF_2275at 2861.813 kb on + strand, within DvMF_2275at 2861.820 kb on + strand, within DvMF_2275at 2861.833 kb on - strand, within DvMF_2275at 2861.863 kb on - strand, within DvMF_2275at 2861.888 kb on + strand, within DvMF_2275at 2861.896 kb on - strand, within DvMF_2275at 2861.926 kb on - strand, within DvMF_2275at 2861.941 kb on - strand, within DvMF_2275at 2861.959 kb on + strand, within DvMF_2275at 2862.047 kb on - strand, within DvMF_2275at 2862.047 kb on - strand, within DvMF_2275at 2862.062 kb on - strand, within DvMF_2275at 2862.159 kb on + strandat 2862.197 kb on - strandat 2862.319 kb on - strandat 2862.462 kb on + strandat 2862.888 kb on - strand, within DvMF_2276

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,861,527 - DvMF_2275 0.11 -0.8
2,861,731 + DvMF_2275 0.39 -0.7
2,861,813 + DvMF_2275 0.50 -0.8
2,861,820 + DvMF_2275 0.51 -1.3
2,861,833 - DvMF_2275 0.53 -0.9
2,861,863 - DvMF_2275 0.57 -1.2
2,861,888 + DvMF_2275 0.60 +0.8
2,861,896 - DvMF_2275 0.61 -1.1
2,861,926 - DvMF_2275 0.65 -0.8
2,861,941 - DvMF_2275 0.67 -0.5
2,861,959 + DvMF_2275 0.70 -1.1
2,862,047 - DvMF_2275 0.82 -0.6
2,862,047 - DvMF_2275 0.82 -0.6
2,862,062 - DvMF_2275 0.84 -1.0
2,862,159 + -0.1
2,862,197 - -1.3
2,862,319 - -0.3
2,862,462 + -0.1
2,862,888 - DvMF_2276 0.29 -1.7

Or see this region's nucleotide sequence