Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2160 and DvMF_2161 are separated by 142 nucleotides DvMF_2161 and DvMF_2162 overlap by 4 nucleotides DvMF_2162 and DvMF_2163 are separated by 121 nucleotides
DvMF_2160: DvMF_2160 - hypothetical protein (RefSeq), at 2,694,278 to 2,694,454
_2160
DvMF_2161: DvMF_2161 - transcriptional regulator, MarR family (RefSeq), at 2,694,597 to 2,695,127
_2161
DvMF_2162: DvMF_2162 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,695,124 to 2,696,593
_2162
DvMF_2163: DvMF_2163 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 2,696,715 to 2,699,951
_2163
Position (kb)
2695
2696
2697 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2694.182 kb on - strand at 2694.197 kb on - strand at 2694.233 kb on - strand at 2694.252 kb on + strand at 2694.410 kb on + strand, within DvMF_2160 at 2694.749 kb on + strand, within DvMF_2161 at 2694.784 kb on + strand, within DvMF_2161 at 2694.784 kb on + strand, within DvMF_2161 at 2694.989 kb on + strand, within DvMF_2161 at 2695.123 kb on - strand at 2695.198 kb on - strand at 2695.391 kb on + strand, within DvMF_2162 at 2695.973 kb on + strand, within DvMF_2162 at 2696.082 kb on - strand, within DvMF_2162 at 2696.280 kb on + strand, within DvMF_2162 at 2696.413 kb on - strand, within DvMF_2162 at 2696.580 kb on + strand at 2696.704 kb on + strand at 2696.712 kb on - strand at 2696.822 kb on - strand at 2697.009 kb on + strand at 2697.017 kb on - strand at 2697.215 kb on + strand, within DvMF_2163 at 2697.234 kb on - strand, within DvMF_2163 at 2697.310 kb on + strand, within DvMF_2163 at 2697.439 kb on + strand, within DvMF_2163 at 2697.447 kb on - strand, within DvMF_2163 at 2697.447 kb on - strand, within DvMF_2163 at 2697.447 kb on - strand, within DvMF_2163 at 2697.462 kb on - strand, within DvMF_2163 at 2697.467 kb on - strand, within DvMF_2163
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 % remove 2,694,182 - -1.2 2,694,197 - -0.4 2,694,233 - -0.5 2,694,252 + -0.6 2,694,410 + DvMF_2160 0.75 -0.5 2,694,749 + DvMF_2161 0.29 -0.8 2,694,784 + DvMF_2161 0.35 -0.8 2,694,784 + DvMF_2161 0.35 -0.2 2,694,989 + DvMF_2161 0.74 -0.9 2,695,123 - -0.4 2,695,198 - -1.1 2,695,391 + DvMF_2162 0.18 +0.9 2,695,973 + DvMF_2162 0.58 +0.3 2,696,082 - DvMF_2162 0.65 +0.6 2,696,280 + DvMF_2162 0.79 +0.1 2,696,413 - DvMF_2162 0.88 +1.1 2,696,580 + +0.7 2,696,704 + +1.1 2,696,712 - +1.3 2,696,822 - +1.8 2,697,009 + +5.3 2,697,017 - +1.6 2,697,215 + DvMF_2163 0.15 +1.3 2,697,234 - DvMF_2163 0.16 +1.9 2,697,310 + DvMF_2163 0.18 -1.9 2,697,439 + DvMF_2163 0.22 +1.4 2,697,447 - DvMF_2163 0.23 +1.9 2,697,447 - DvMF_2163 0.23 +1.0 2,697,447 - DvMF_2163 0.23 +1.6 2,697,462 - DvMF_2163 0.23 +1.5 2,697,467 - DvMF_2163 0.23 +1.6
Or see this region's nucleotide sequence