Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2134

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2133 and DvMF_2134 are separated by 112 nucleotidesDvMF_2134 and DvMF_2135 are separated by 575 nucleotides DvMF_2133: DvMF_2133 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,655,462 to 2,657,498 _2133 DvMF_2134: DvMF_2134 - MerR family transcriptional regulator (RefSeq), at 2,657,611 to 2,658,819 _2134 DvMF_2135: DvMF_2135 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 2,659,395 to 2,660,492 _2135 Position (kb) 2657 2658 2659Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2656.676 kb on + strand, within DvMF_2133at 2656.726 kb on + strand, within DvMF_2133at 2656.734 kb on - strand, within DvMF_2133at 2656.924 kb on + strand, within DvMF_2133at 2656.944 kb on + strand, within DvMF_2133at 2656.966 kb on + strand, within DvMF_2133at 2657.027 kb on - strand, within DvMF_2133at 2657.038 kb on + strand, within DvMF_2133at 2657.100 kb on - strand, within DvMF_2133at 2657.117 kb on + strand, within DvMF_2133at 2657.148 kb on - strand, within DvMF_2133at 2657.175 kb on + strand, within DvMF_2133at 2657.178 kb on - strand, within DvMF_2133at 2657.222 kb on + strand, within DvMF_2133at 2657.387 kb on - strandat 2657.481 kb on + strandat 2657.592 kb on + strandat 2657.609 kb on + strandat 2657.614 kb on + strandat 2657.614 kb on + strandat 2657.808 kb on - strand, within DvMF_2134at 2657.858 kb on + strand, within DvMF_2134at 2657.968 kb on + strand, within DvMF_2134at 2658.075 kb on + strand, within DvMF_2134at 2658.162 kb on + strand, within DvMF_2134at 2658.249 kb on + strand, within DvMF_2134at 2658.834 kb on - strandat 2658.935 kb on + strandat 2659.013 kb on - strandat 2659.017 kb on + strandat 2659.115 kb on + strandat 2659.380 kb on - strandat 2659.424 kb on + strandat 2659.432 kb on - strandat 2659.577 kb on + strand, within DvMF_2135at 2659.585 kb on - strand, within DvMF_2135at 2659.600 kb on - strand, within DvMF_2135at 2659.608 kb on + strand, within DvMF_2135at 2659.685 kb on - strand, within DvMF_2135at 2659.800 kb on + strand, within DvMF_2135at 2659.805 kb on + strand, within DvMF_2135at 2659.805 kb on + strand, within DvMF_2135

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
remove
2,656,676 + DvMF_2133 0.60 -0.5
2,656,726 + DvMF_2133 0.62 -0.7
2,656,734 - DvMF_2133 0.62 -0.8
2,656,924 + DvMF_2133 0.72 -0.9
2,656,944 + DvMF_2133 0.73 +0.0
2,656,966 + DvMF_2133 0.74 -1.2
2,657,027 - DvMF_2133 0.77 -0.5
2,657,038 + DvMF_2133 0.77 -0.7
2,657,100 - DvMF_2133 0.80 -0.6
2,657,117 + DvMF_2133 0.81 -1.0
2,657,148 - DvMF_2133 0.83 -0.5
2,657,175 + DvMF_2133 0.84 -1.1
2,657,178 - DvMF_2133 0.84 -0.4
2,657,222 + DvMF_2133 0.86 -0.8
2,657,387 - -1.7
2,657,481 + -1.2
2,657,592 + -1.0
2,657,609 + -0.1
2,657,614 + -1.6
2,657,614 + -1.0
2,657,808 - DvMF_2134 0.16 -1.4
2,657,858 + DvMF_2134 0.20 -1.5
2,657,968 + DvMF_2134 0.30 -1.6
2,658,075 + DvMF_2134 0.38 -0.7
2,658,162 + DvMF_2134 0.46 -1.6
2,658,249 + DvMF_2134 0.53 +0.2
2,658,834 - -0.5
2,658,935 + -1.1
2,659,013 - -0.5
2,659,017 + -0.6
2,659,115 + -0.7
2,659,380 - -1.0
2,659,424 + +0.3
2,659,432 - -3.9
2,659,577 + DvMF_2135 0.17 -0.3
2,659,585 - DvMF_2135 0.17 -0.7
2,659,600 - DvMF_2135 0.19 -0.5
2,659,608 + DvMF_2135 0.19 -1.2
2,659,685 - DvMF_2135 0.26 -0.3
2,659,800 + DvMF_2135 0.37 -1.0
2,659,805 + DvMF_2135 0.37 -0.3
2,659,805 + DvMF_2135 0.37 -0.5

Or see this region's nucleotide sequence