Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1967

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1966 and DvMF_1967 are separated by 143 nucleotidesDvMF_1967 and DvMF_1968 are separated by 56 nucleotides DvMF_1966: DvMF_1966 - thiamine-monophosphate kinase (RefSeq), at 2,429,043 to 2,430,140 _1966 DvMF_1967: DvMF_1967 - UvrD/REP helicase (RefSeq), at 2,430,284 to 2,432,653 _1967 DvMF_1968: DvMF_1968 - type I phosphodiesterase/nucleotide pyrophosphatase (RefSeq), at 2,432,710 to 2,434,473 _1968 Position (kb) 2430 2431 2432 2433Strain fitness (log2 ratio) -3 -2 -1 0 1at 2430.158 kb on - strandat 2430.171 kb on - strandat 2430.379 kb on - strandat 2430.514 kb on - strandat 2430.684 kb on - strand, within DvMF_1967at 2430.827 kb on + strand, within DvMF_1967at 2430.857 kb on - strand, within DvMF_1967at 2430.971 kb on + strand, within DvMF_1967at 2430.997 kb on - strand, within DvMF_1967at 2431.021 kb on + strand, within DvMF_1967at 2431.095 kb on + strand, within DvMF_1967at 2431.190 kb on - strand, within DvMF_1967at 2431.256 kb on + strand, within DvMF_1967at 2431.273 kb on + strand, within DvMF_1967at 2431.273 kb on + strand, within DvMF_1967at 2431.273 kb on + strand, within DvMF_1967at 2431.281 kb on - strand, within DvMF_1967at 2431.358 kb on + strand, within DvMF_1967at 2431.365 kb on + strand, within DvMF_1967at 2431.365 kb on + strand, within DvMF_1967at 2431.365 kb on + strand, within DvMF_1967at 2431.373 kb on - strand, within DvMF_1967at 2431.373 kb on - strand, within DvMF_1967at 2431.373 kb on - strand, within DvMF_1967at 2431.443 kb on + strand, within DvMF_1967at 2431.451 kb on - strand, within DvMF_1967at 2431.459 kb on + strand, within DvMF_1967at 2431.467 kb on - strand, within DvMF_1967at 2431.553 kb on - strand, within DvMF_1967at 2431.558 kb on - strand, within DvMF_1967at 2431.620 kb on + strand, within DvMF_1967at 2431.725 kb on + strand, within DvMF_1967at 2432.078 kb on + strand, within DvMF_1967at 2432.381 kb on + strand, within DvMF_1967at 2432.742 kb on - strandat 2432.802 kb on - strandat 2432.925 kb on + strand, within DvMF_1968at 2433.014 kb on - strand, within DvMF_1968at 2433.030 kb on + strand, within DvMF_1968at 2433.042 kb on - strand, within DvMF_1968at 2433.130 kb on + strand, within DvMF_1968at 2433.202 kb on - strand, within DvMF_1968at 2433.212 kb on - strand, within DvMF_1968at 2433.289 kb on + strand, within DvMF_1968at 2433.556 kb on + strand, within DvMF_1968

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,430,158 - -0.4
2,430,171 - -0.5
2,430,379 - -1.2
2,430,514 - -1.0
2,430,684 - DvMF_1967 0.17 +0.0
2,430,827 + DvMF_1967 0.23 -1.3
2,430,857 - DvMF_1967 0.24 -1.8
2,430,971 + DvMF_1967 0.29 -0.9
2,430,997 - DvMF_1967 0.30 -1.9
2,431,021 + DvMF_1967 0.31 -0.8
2,431,095 + DvMF_1967 0.34 -1.6
2,431,190 - DvMF_1967 0.38 -0.8
2,431,256 + DvMF_1967 0.41 -2.9
2,431,273 + DvMF_1967 0.42 -1.0
2,431,273 + DvMF_1967 0.42 -1.7
2,431,273 + DvMF_1967 0.42 -2.3
2,431,281 - DvMF_1967 0.42 -2.1
2,431,358 + DvMF_1967 0.45 -1.6
2,431,365 + DvMF_1967 0.46 -1.4
2,431,365 + DvMF_1967 0.46 +0.1
2,431,365 + DvMF_1967 0.46 -1.5
2,431,373 - DvMF_1967 0.46 -1.8
2,431,373 - DvMF_1967 0.46 -1.3
2,431,373 - DvMF_1967 0.46 -1.8
2,431,443 + DvMF_1967 0.49 -0.2
2,431,451 - DvMF_1967 0.49 -1.5
2,431,459 + DvMF_1967 0.50 -2.5
2,431,467 - DvMF_1967 0.50 -3.1
2,431,553 - DvMF_1967 0.54 -1.7
2,431,558 - DvMF_1967 0.54 -1.7
2,431,620 + DvMF_1967 0.56 -0.5
2,431,725 + DvMF_1967 0.61 -1.0
2,432,078 + DvMF_1967 0.76 -1.0
2,432,381 + DvMF_1967 0.88 -1.0
2,432,742 - -0.3
2,432,802 - -0.7
2,432,925 + DvMF_1968 0.12 -0.5
2,433,014 - DvMF_1968 0.17 +0.0
2,433,030 + DvMF_1968 0.18 -0.3
2,433,042 - DvMF_1968 0.19 -0.3
2,433,130 + DvMF_1968 0.24 -0.3
2,433,202 - DvMF_1968 0.28 -0.4
2,433,212 - DvMF_1968 0.28 -0.3
2,433,289 + DvMF_1968 0.33 -0.5
2,433,556 + DvMF_1968 0.48 -0.6

Or see this region's nucleotide sequence