Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1956

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1953 and DvMF_1954 are separated by 95 nucleotidesDvMF_1954 and DvMF_1955 are separated by 18 nucleotidesDvMF_1955 and DvMF_1956 are separated by 78 nucleotidesDvMF_1956 and DvMF_1957 are separated by 611 nucleotides DvMF_1953: DvMF_1953 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,414,670 to 2,415,680 _1953 DvMF_1954: DvMF_1954 - hypothetical protein (RefSeq), at 2,415,776 to 2,416,114 _1954 DvMF_1955: DvMF_1955 - thiamineS protein (RefSeq), at 2,416,133 to 2,416,360 _1955 DvMF_1956: DvMF_1956 - Aldehyde ferredoxin oxidoreductase (RefSeq), at 2,416,439 to 2,418,166 _1956 DvMF_1957: DvMF_1957 - extracellular solute-binding protein family 1 (RefSeq), at 2,418,778 to 2,419,854 _1957 Position (kb) 2416 2417 2418 2419Strain fitness (log2 ratio) -3 -2 -1 0 1at 2415.508 kb on - strand, within DvMF_1953at 2415.784 kb on + strandat 2416.123 kb on - strandat 2416.129 kb on + strandat 2416.157 kb on - strand, within DvMF_1955at 2416.199 kb on + strand, within DvMF_1955at 2416.496 kb on - strandat 2416.874 kb on + strand, within DvMF_1956at 2416.882 kb on - strand, within DvMF_1956at 2416.966 kb on - strand, within DvMF_1956at 2416.980 kb on + strand, within DvMF_1956at 2417.262 kb on - strand, within DvMF_1956at 2417.563 kb on - strand, within DvMF_1956at 2417.568 kb on + strand, within DvMF_1956at 2417.569 kb on - strand, within DvMF_1956at 2417.576 kb on - strand, within DvMF_1956at 2417.676 kb on - strand, within DvMF_1956at 2417.806 kb on - strand, within DvMF_1956at 2417.859 kb on + strand, within DvMF_1956at 2418.091 kb on + strandat 2418.175 kb on + strandat 2418.347 kb on + strandat 2418.678 kb on + strandat 2418.924 kb on - strand, within DvMF_1957at 2418.924 kb on - strand, within DvMF_1957at 2418.947 kb on - strand, within DvMF_1957at 2418.949 kb on + strand, within DvMF_1957at 2419.048 kb on - strand, within DvMF_1957at 2419.128 kb on - strand, within DvMF_1957

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,415,508 - DvMF_1953 0.83 -0.5
2,415,784 + -0.6
2,416,123 - -0.2
2,416,129 + -0.4
2,416,157 - DvMF_1955 0.11 -0.3
2,416,199 + DvMF_1955 0.29 -0.1
2,416,496 - -3.5
2,416,874 + DvMF_1956 0.25 -0.9
2,416,882 - DvMF_1956 0.26 -1.2
2,416,966 - DvMF_1956 0.30 -1.7
2,416,980 + DvMF_1956 0.31 -1.7
2,417,262 - DvMF_1956 0.48 -2.4
2,417,563 - DvMF_1956 0.65 -1.2
2,417,568 + DvMF_1956 0.65 -1.7
2,417,569 - DvMF_1956 0.65 -1.9
2,417,576 - DvMF_1956 0.66 -1.7
2,417,676 - DvMF_1956 0.72 -1.5
2,417,806 - DvMF_1956 0.79 -2.2
2,417,859 + DvMF_1956 0.82 -0.7
2,418,091 + -1.5
2,418,175 + -1.1
2,418,347 + -2.1
2,418,678 + -1.0
2,418,924 - DvMF_1957 0.14 -0.4
2,418,924 - DvMF_1957 0.14 -0.6
2,418,947 - DvMF_1957 0.16 -0.4
2,418,949 + DvMF_1957 0.16 -0.9
2,419,048 - DvMF_1957 0.25 -0.8
2,419,128 - DvMF_1957 0.32 -0.3

Or see this region's nucleotide sequence