Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1942

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1940 and DvMF_1941 overlap by 81 nucleotidesDvMF_1941 and DvMF_1942 are separated by 418 nucleotidesDvMF_1942 and DvMF_1943 are separated by 301 nucleotides DvMF_1940: DvMF_1940 - Lytic transglycosylase catalytic (RefSeq), at 2,394,830 to 2,396,575 _1940 DvMF_1941: DvMF_1941 - hypothetical protein (RefSeq), at 2,396,495 to 2,396,872 _1941 DvMF_1942: DvMF_1942 - IMP cyclohydrolase (RefSeq), at 2,397,291 to 2,398,583 _1942 DvMF_1943: DvMF_1943 - ribonuclease II (RefSeq), at 2,398,885 to 2,401,092 _1943 Position (kb) 2397 2398 2399Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2396.308 kb on - strand, within DvMF_1940at 2396.629 kb on - strand, within DvMF_1941at 2396.730 kb on - strand, within DvMF_1941at 2396.775 kb on - strand, within DvMF_1941at 2396.960 kb on - strandat 2396.976 kb on + strandat 2397.367 kb on + strandat 2397.387 kb on + strandat 2397.443 kb on - strand, within DvMF_1942at 2397.728 kb on + strand, within DvMF_1942at 2397.736 kb on - strand, within DvMF_1942at 2397.743 kb on - strand, within DvMF_1942at 2397.854 kb on + strand, within DvMF_1942at 2397.913 kb on + strand, within DvMF_1942at 2397.923 kb on + strand, within DvMF_1942at 2398.155 kb on - strand, within DvMF_1942at 2398.235 kb on - strand, within DvMF_1942at 2398.455 kb on + strandat 2398.826 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,396,308 - DvMF_1940 0.85 -0.3
2,396,629 - DvMF_1941 0.35 -0.3
2,396,730 - DvMF_1941 0.62 -0.3
2,396,775 - DvMF_1941 0.74 -0.1
2,396,960 - -0.5
2,396,976 + -0.7
2,397,367 + -0.1
2,397,387 + -0.7
2,397,443 - DvMF_1942 0.12 -3.0
2,397,728 + DvMF_1942 0.34 -3.2
2,397,736 - DvMF_1942 0.34 -0.7
2,397,743 - DvMF_1942 0.35 -0.1
2,397,854 + DvMF_1942 0.44 -2.7
2,397,913 + DvMF_1942 0.48 -1.1
2,397,923 + DvMF_1942 0.49 -1.5
2,398,155 - DvMF_1942 0.67 -3.8
2,398,235 - DvMF_1942 0.73 +0.9
2,398,455 + -2.7
2,398,826 - -0.9

Or see this region's nucleotide sequence