Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1893

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1892 and DvMF_1893 overlap by 4 nucleotidesDvMF_1893 and DvMF_1894 are separated by 143 nucleotides DvMF_1892: DvMF_1892 - CMP-N-acetylneuraminic acid synthetase (RefSeq), at 2,328,895 to 2,330,853 _1892 DvMF_1893: DvMF_1893 - acylneuraminate cytidylyltransferase (RefSeq), at 2,330,850 to 2,331,545 _1893 DvMF_1894: DvMF_1894 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,331,689 to 2,332,753 _1894 Position (kb) 2330 2331 2332Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2330.150 kb on + strand, within DvMF_1892at 2330.179 kb on + strand, within DvMF_1892at 2330.179 kb on + strand, within DvMF_1892at 2330.403 kb on - strand, within DvMF_1892at 2330.643 kb on - strand, within DvMF_1892at 2330.709 kb on - strandat 2330.734 kb on + strandat 2330.892 kb on + strandat 2330.947 kb on - strand, within DvMF_1893at 2331.145 kb on - strand, within DvMF_1893at 2331.257 kb on + strand, within DvMF_1893at 2331.373 kb on + strand, within DvMF_1893at 2331.378 kb on + strand, within DvMF_1893at 2331.405 kb on - strand, within DvMF_1893at 2331.420 kb on - strand, within DvMF_1893at 2331.584 kb on + strandat 2331.687 kb on - strandat 2331.898 kb on + strand, within DvMF_1894at 2332.027 kb on - strand, within DvMF_1894at 2332.458 kb on - strand, within DvMF_1894

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,330,150 + DvMF_1892 0.64 -0.9
2,330,179 + DvMF_1892 0.66 -3.5
2,330,179 + DvMF_1892 0.66 -4.5
2,330,403 - DvMF_1892 0.77 -1.4
2,330,643 - DvMF_1892 0.89 -1.0
2,330,709 - -0.0
2,330,734 + -0.5
2,330,892 + -3.3
2,330,947 - DvMF_1893 0.14 -3.1
2,331,145 - DvMF_1893 0.42 -2.9
2,331,257 + DvMF_1893 0.58 -3.1
2,331,373 + DvMF_1893 0.75 -4.1
2,331,378 + DvMF_1893 0.76 -2.7
2,331,405 - DvMF_1893 0.80 -3.4
2,331,420 - DvMF_1893 0.82 -4.7
2,331,584 + -0.7
2,331,687 - -1.1
2,331,898 + DvMF_1894 0.20 -3.7
2,332,027 - DvMF_1894 0.32 -3.0
2,332,458 - DvMF_1894 0.72 -3.8

Or see this region's nucleotide sequence