Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1800

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1799 and DvMF_1800 are separated by 319 nucleotidesDvMF_1800 and DvMF_1801 are separated by 2 nucleotides DvMF_1799: DvMF_1799 - phage shock protein A, PspA (RefSeq), at 2,200,230 to 2,200,961 _1799 DvMF_1800: DvMF_1800 - phage shock protein B (RefSeq), at 2,201,281 to 2,201,604 _1800 DvMF_1801: DvMF_1801 - phage shock protein C, PspC (RefSeq), at 2,201,607 to 2,202,188 _1801 Position (kb) 2201 2202Strain fitness (log2 ratio) -1 0 1at 2200.292 kb on + strandat 2201.083 kb on - strandat 2201.237 kb on + strandat 2201.282 kb on + strandat 2201.367 kb on - strand, within DvMF_1800at 2201.867 kb on + strand, within DvMF_1801at 2202.284 kb on - strandat 2202.335 kb on - strandat 2202.370 kb on - strandat 2202.572 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
remove
2,200,292 + -0.1
2,201,083 - -0.7
2,201,237 + -0.7
2,201,282 + -0.3
2,201,367 - DvMF_1800 0.27 -1.4
2,201,867 + DvMF_1801 0.45 -0.4
2,202,284 - -0.4
2,202,335 - -0.5
2,202,370 - -0.2
2,202,572 - -0.5

Or see this region's nucleotide sequence