Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1711

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1710 and DvMF_1711 are separated by 316 nucleotidesDvMF_1711 and DvMF_1712 are separated by 428 nucleotides DvMF_1710: DvMF_1710 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 2,087,857 to 2,089,641 _1710 DvMF_1711: DvMF_1711 - protein of unknown function DUF81 (RefSeq), at 2,089,958 to 2,091,022 _1711 DvMF_1712: DvMF_1712 - hypothetical protein (RefSeq), at 2,091,451 to 2,091,708 _1712 Position (kb) 2089 2090 2091 2092Strain fitness (log2 ratio) -1 0 1at 2088.964 kb on - strand, within DvMF_1710at 2089.149 kb on - strand, within DvMF_1710at 2089.194 kb on + strand, within DvMF_1710at 2089.195 kb on - strand, within DvMF_1710at 2089.595 kb on - strandat 2089.860 kb on - strandat 2089.944 kb on + strandat 2090.009 kb on + strandat 2090.247 kb on - strand, within DvMF_1711at 2090.364 kb on + strand, within DvMF_1711at 2090.377 kb on - strand, within DvMF_1711at 2090.693 kb on - strand, within DvMF_1711at 2090.820 kb on + strand, within DvMF_1711at 2090.849 kb on - strand, within DvMF_1711at 2090.956 kb on - strandat 2091.133 kb on - strandat 2091.401 kb on - strandat 2091.436 kb on + strandat 2091.459 kb on - strandat 2091.459 kb on - strandat 2091.516 kb on + strand, within DvMF_1712at 2091.853 kb on + strandat 2091.861 kb on - strandat 2091.861 kb on - strandat 2091.895 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,088,964 - DvMF_1710 0.62 -0.8
2,089,149 - DvMF_1710 0.72 -0.3
2,089,194 + DvMF_1710 0.75 -0.5
2,089,195 - DvMF_1710 0.75 -0.9
2,089,595 - -0.1
2,089,860 - -0.2
2,089,944 + -0.3
2,090,009 + +0.5
2,090,247 - DvMF_1711 0.27 -0.4
2,090,364 + DvMF_1711 0.38 -0.5
2,090,377 - DvMF_1711 0.39 -0.4
2,090,693 - DvMF_1711 0.69 -0.3
2,090,820 + DvMF_1711 0.81 -0.7
2,090,849 - DvMF_1711 0.84 -0.3
2,090,956 - -0.8
2,091,133 - -0.6
2,091,401 - -0.5
2,091,436 + +0.2
2,091,459 - -0.7
2,091,459 - -0.3
2,091,516 + DvMF_1712 0.25 -0.6
2,091,853 + -0.4
2,091,861 - -1.3
2,091,861 - -0.6
2,091,895 + -0.1

Or see this region's nucleotide sequence