Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1650

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1647 and DvMF_1648 are separated by 23 nucleotidesDvMF_1648 and DvMF_1649 are separated by 10 nucleotidesDvMF_1649 and DvMF_1650 are separated by 15 nucleotidesDvMF_1650 and DvMF_1651 overlap by 14 nucleotidesDvMF_1651 and DvMF_1652 overlap by 1 nucleotidesDvMF_1652 and DvMF_1653 are separated by 2 nucleotides DvMF_1647: DvMF_1647 - no description, at 2,029,036 to 2,029,128 _1647 DvMF_1648: DvMF_1648 - hypothetical protein (RefSeq), at 2,029,152 to 2,029,499 _1648 DvMF_1649: DvMF_1649 - hypothetical protein (RefSeq), at 2,029,510 to 2,029,929 _1649 DvMF_1650: DvMF_1650 - hypothetical protein (RefSeq), at 2,029,945 to 2,030,313 _1650 DvMF_1651: DvMF_1651 - hypothetical protein (RefSeq), at 2,030,300 to 2,030,698 _1651 DvMF_1652: DvMF_1652 - phage head-tail adaptor (RefSeq), at 2,030,698 to 2,031,012 _1652 DvMF_1653: DvMF_1653 - phage conserved hypothetical protein, phiE125 gp8 (RefSeq), at 2,031,015 to 2,031,599 _1653 Position (kb) 2029 2030 2031Strain fitness (log2 ratio) -2 -1 0 1at 2029.025 kb on - strandat 2029.259 kb on - strand, within DvMF_1648at 2029.430 kb on + strand, within DvMF_1648at 2029.471 kb on + strandat 2029.626 kb on - strand, within DvMF_1649at 2030.082 kb on + strand, within DvMF_1650at 2030.141 kb on + strand, within DvMF_1650at 2030.144 kb on - strand, within DvMF_1650at 2030.330 kb on - strandat 2030.743 kb on + strand, within DvMF_1652at 2030.743 kb on + strand, within DvMF_1652at 2030.900 kb on + strand, within DvMF_1652at 2030.917 kb on - strand, within DvMF_1652at 2031.032 kb on + strandat 2031.108 kb on - strand, within DvMF_1653at 2031.277 kb on + strand, within DvMF_1653at 2031.304 kb on - strand, within DvMF_1653at 2031.310 kb on + strand, within DvMF_1653

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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2,029,025 - -0.6
2,029,259 - DvMF_1648 0.31 -0.6
2,029,430 + DvMF_1648 0.80 -0.2
2,029,471 + -0.6
2,029,626 - DvMF_1649 0.28 -0.4
2,030,082 + DvMF_1650 0.37 -0.7
2,030,141 + DvMF_1650 0.53 -0.1
2,030,144 - DvMF_1650 0.54 -0.9
2,030,330 - -0.7
2,030,743 + DvMF_1652 0.14 +0.5
2,030,743 + DvMF_1652 0.14 -0.3
2,030,900 + DvMF_1652 0.64 -0.8
2,030,917 - DvMF_1652 0.70 -2.2
2,031,032 + +0.3
2,031,108 - DvMF_1653 0.16 -0.5
2,031,277 + DvMF_1653 0.45 -0.3
2,031,304 - DvMF_1653 0.49 -1.0
2,031,310 + DvMF_1653 0.50 +0.5

Or see this region's nucleotide sequence