Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1607

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1606 and DvMF_1607 are separated by 144 nucleotidesDvMF_1607 and DvMF_1608 overlap by 13 nucleotides DvMF_1606: DvMF_1606 - hypothetical protein (RefSeq), at 1,978,169 to 1,979,344 _1606 DvMF_1607: DvMF_1607 - two component transcriptional regulator, LuxR family (RefSeq), at 1,979,489 to 1,980,199 _1607 DvMF_1608: DvMF_1608 - histidine kinase (RefSeq), at 1,980,187 to 1,981,884 _1608 Position (kb) 1979 1980 1981Strain fitness (log2 ratio) -2 -1 0 1at 1978.530 kb on + strand, within DvMF_1606at 1978.546 kb on - strand, within DvMF_1606at 1978.574 kb on - strand, within DvMF_1606at 1978.811 kb on - strand, within DvMF_1606at 1978.895 kb on + strand, within DvMF_1606at 1978.929 kb on - strand, within DvMF_1606at 1979.023 kb on + strand, within DvMF_1606at 1979.046 kb on + strand, within DvMF_1606at 1979.377 kb on - strandat 1979.789 kb on + strand, within DvMF_1607at 1979.876 kb on + strand, within DvMF_1607at 1980.336 kb on - strandat 1980.585 kb on + strand, within DvMF_1608at 1980.585 kb on + strand, within DvMF_1608at 1980.611 kb on - strand, within DvMF_1608at 1980.642 kb on - strand, within DvMF_1608at 1980.771 kb on + strand, within DvMF_1608at 1980.854 kb on + strand, within DvMF_1608

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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1,978,530 + DvMF_1606 0.31 -0.4
1,978,546 - DvMF_1606 0.32 +0.5
1,978,574 - DvMF_1606 0.34 -0.4
1,978,811 - DvMF_1606 0.55 +0.2
1,978,895 + DvMF_1606 0.62 -0.3
1,978,929 - DvMF_1606 0.65 -0.8
1,979,023 + DvMF_1606 0.73 -0.5
1,979,046 + DvMF_1606 0.75 -0.7
1,979,377 - +0.1
1,979,789 + DvMF_1607 0.42 -1.8
1,979,876 + DvMF_1607 0.54 -1.1
1,980,336 - -0.8
1,980,585 + DvMF_1608 0.23 -1.3
1,980,585 + DvMF_1608 0.23 -1.2
1,980,611 - DvMF_1608 0.25 -0.2
1,980,642 - DvMF_1608 0.27 -0.5
1,980,771 + DvMF_1608 0.34 -0.7
1,980,854 + DvMF_1608 0.39 -0.3

Or see this region's nucleotide sequence