Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1291

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1289 and DvMF_1290 are separated by 142 nucleotidesDvMF_1290 and DvMF_1291 overlap by 4 nucleotidesDvMF_1291 and DvMF_1292 are separated by 1 nucleotidesDvMF_1292 and DvMF_1293 are separated by 15 nucleotides DvMF_1289: DvMF_1289 - protein of unknown function DUF1320 (RefSeq), at 1,580,199 to 1,580,630 _1289 DvMF_1290: DvMF_1290 - phage virion morphogenesis protein (RefSeq), at 1,580,773 to 1,581,219 _1290 DvMF_1291: DvMF_1291 - hypothetical protein (RefSeq), at 1,581,216 to 1,581,752 _1291 DvMF_1292: DvMF_1292 - hypothetical protein (RefSeq), at 1,581,754 to 1,582,179 _1292 DvMF_1293: DvMF_1293 - hypothetical protein (RefSeq), at 1,582,195 to 1,583,880 _1293 Position (kb) 1581 1582Strain fitness (log2 ratio) -2 -1 0 1at 1580.232 kb on - strandat 1580.306 kb on + strand, within DvMF_1289at 1580.323 kb on - strand, within DvMF_1289at 1580.651 kb on - strandat 1580.791 kb on + strandat 1580.806 kb on + strandat 1580.840 kb on + strand, within DvMF_1290at 1581.097 kb on + strand, within DvMF_1290at 1581.153 kb on + strand, within DvMF_1290at 1581.153 kb on + strand, within DvMF_1290at 1581.161 kb on - strand, within DvMF_1290at 1581.186 kb on + strandat 1581.396 kb on + strand, within DvMF_1291at 1581.593 kb on + strand, within DvMF_1291at 1581.598 kb on + strand, within DvMF_1291at 1581.665 kb on + strand, within DvMF_1291at 1581.794 kb on - strandat 1581.794 kb on - strandat 1581.800 kb on + strand, within DvMF_1292at 1581.849 kb on + strand, within DvMF_1292at 1581.994 kb on + strand, within DvMF_1292at 1582.326 kb on + strandat 1582.371 kb on - strand, within DvMF_1293at 1582.372 kb on - strand, within DvMF_1293at 1582.410 kb on + strand, within DvMF_1293at 1582.452 kb on - strand, within DvMF_1293at 1582.509 kb on + strand, within DvMF_1293at 1582.517 kb on - strand, within DvMF_1293at 1582.557 kb on - strand, within DvMF_1293at 1582.564 kb on - strand, within DvMF_1293at 1582.646 kb on + strand, within DvMF_1293

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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1,580,232 - -0.7
1,580,306 + DvMF_1289 0.25 -0.4
1,580,323 - DvMF_1289 0.29 -0.8
1,580,651 - -1.0
1,580,791 + -0.7
1,580,806 + -1.7
1,580,840 + DvMF_1290 0.15 -0.8
1,581,097 + DvMF_1290 0.72 -0.4
1,581,153 + DvMF_1290 0.85 -0.3
1,581,153 + DvMF_1290 0.85 -0.9
1,581,161 - DvMF_1290 0.87 -2.1
1,581,186 + -0.2
1,581,396 + DvMF_1291 0.34 -0.8
1,581,593 + DvMF_1291 0.70 -1.4
1,581,598 + DvMF_1291 0.71 -0.5
1,581,665 + DvMF_1291 0.84 -0.9
1,581,794 - +0.2
1,581,794 - -1.0
1,581,800 + DvMF_1292 0.11 -1.1
1,581,849 + DvMF_1292 0.22 -0.5
1,581,994 + DvMF_1292 0.56 -0.6
1,582,326 + -0.8
1,582,371 - DvMF_1293 0.10 -1.4
1,582,372 - DvMF_1293 0.10 +0.9
1,582,410 + DvMF_1293 0.13 -0.6
1,582,452 - DvMF_1293 0.15 -0.6
1,582,509 + DvMF_1293 0.19 -1.0
1,582,517 - DvMF_1293 0.19 -0.6
1,582,557 - DvMF_1293 0.21 -0.5
1,582,564 - DvMF_1293 0.22 -0.3
1,582,646 + DvMF_1293 0.27 -0.8

Or see this region's nucleotide sequence