Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1275

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1274 and DvMF_1275 are separated by 69 nucleotidesDvMF_1275 and DvMF_1276 overlap by 1 nucleotidesDvMF_1276 and DvMF_1277 overlap by 1 nucleotides DvMF_1274: DvMF_1274 - hypothetical protein (RefSeq), at 1,567,099 to 1,568,001 _1274 DvMF_1275: DvMF_1275 - hypothetical protein (RefSeq), at 1,568,071 to 1,568,472 _1275 DvMF_1276: DvMF_1276 - Lytic transglycosylase catalytic (RefSeq), at 1,568,472 to 1,569,143 _1276 DvMF_1277: DvMF_1277 - hypothetical protein (RefSeq), at 1,569,143 to 1,569,562 _1277 Position (kb) 1568 1569Strain fitness (log2 ratio) -2 -1 0 1at 1568.278 kb on - strand, within DvMF_1275at 1568.395 kb on + strand, within DvMF_1275at 1568.491 kb on - strandat 1568.548 kb on + strand, within DvMF_1276at 1568.563 kb on - strand, within DvMF_1276at 1568.618 kb on - strand, within DvMF_1276at 1568.804 kb on + strand, within DvMF_1276at 1568.976 kb on - strand, within DvMF_1276at 1569.083 kb on + strandat 1569.260 kb on - strand, within DvMF_1277at 1569.308 kb on + strand, within DvMF_1277at 1569.374 kb on - strand, within DvMF_1277

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
remove
1,568,278 - DvMF_1275 0.51 -0.9
1,568,395 + DvMF_1275 0.81 -2.4
1,568,491 - -0.5
1,568,548 + DvMF_1276 0.11 -0.8
1,568,563 - DvMF_1276 0.14 +1.0
1,568,618 - DvMF_1276 0.22 -0.1
1,568,804 + DvMF_1276 0.49 -0.5
1,568,976 - DvMF_1276 0.75 +0.0
1,569,083 + +1.1
1,569,260 - DvMF_1277 0.28 -0.5
1,569,308 + DvMF_1277 0.39 -0.9
1,569,374 - DvMF_1277 0.55 +0.0

Or see this region's nucleotide sequence