Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1175

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1174 and DvMF_1175 overlap by 4 nucleotidesDvMF_1175 and DvMF_1176 overlap by 4 nucleotidesDvMF_1176 and DvMF_1177 overlap by 20 nucleotides DvMF_1174: DvMF_1174 - cobalamin (vitamin B12) biosynthesis CbiD protein (RefSeq), at 1,450,710 to 1,452,059 _1174 DvMF_1175: DvMF_1175 - precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit (RefSeq), at 1,452,056 to 1,453,480 _1175 DvMF_1176: DvMF_1176 - extracellular solute-binding protein family 3 (RefSeq), at 1,453,477 to 1,454,415 _1176 DvMF_1177: DvMF_1177 - precorrin-4 C11-methyltransferase (RefSeq), at 1,454,396 to 1,455,313 _1177 Position (kb) 1452 1453 1454Strain fitness (log2 ratio) -2 -1 0 1at 1451.337 kb on - strand, within DvMF_1174at 1451.614 kb on + strand, within DvMF_1174at 1451.646 kb on - strand, within DvMF_1174at 1451.717 kb on - strand, within DvMF_1174at 1451.907 kb on - strand, within DvMF_1174at 1453.053 kb on + strand, within DvMF_1175at 1453.216 kb on - strand, within DvMF_1175at 1453.300 kb on - strand, within DvMF_1175at 1453.682 kb on + strand, within DvMF_1176at 1453.825 kb on + strand, within DvMF_1176at 1453.838 kb on + strand, within DvMF_1176at 1453.862 kb on + strand, within DvMF_1176at 1453.890 kb on - strand, within DvMF_1176at 1454.106 kb on - strand, within DvMF_1176at 1454.148 kb on - strand, within DvMF_1176at 1454.251 kb on + strand, within DvMF_1176at 1454.287 kb on - strand, within DvMF_1176at 1454.388 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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1,451,337 - DvMF_1174 0.46 -2.1
1,451,614 + DvMF_1174 0.67 -1.7
1,451,646 - DvMF_1174 0.69 -2.4
1,451,717 - DvMF_1174 0.75 -2.7
1,451,907 - DvMF_1174 0.89 -1.6
1,453,053 + DvMF_1175 0.70 -1.2
1,453,216 - DvMF_1175 0.81 -0.1
1,453,300 - DvMF_1175 0.87 -0.7
1,453,682 + DvMF_1176 0.22 -0.9
1,453,825 + DvMF_1176 0.37 +0.0
1,453,838 + DvMF_1176 0.38 -1.5
1,453,862 + DvMF_1176 0.41 -0.5
1,453,890 - DvMF_1176 0.44 -0.3
1,454,106 - DvMF_1176 0.67 -1.8
1,454,148 - DvMF_1176 0.71 -0.3
1,454,251 + DvMF_1176 0.82 -0.9
1,454,287 - DvMF_1176 0.86 -0.8
1,454,388 + -0.1

Or see this region's nucleotide sequence