Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0917 and DvMF_R0023 are separated by 406 nucleotides DvMF_R0023 and DvMF_R0024 are separated by 105 nucleotides DvMF_R0024 and DvMF_R0025 are separated by 168 nucleotides DvMF_R0025 and DvMF_R0026 are separated by 33 nucleotides DvMF_R0026 and DvMF_R0027 are separated by 112 nucleotides
DvMF_0917: DvMF_0917 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,102,353 to 1,104,161
_0917
DvMF_R0023: DvMF_R0023 - 5S ribosomal RNA (RefSeq), at 1,104,568 to 1,104,682
_R0023
DvMF_R0024: DvMF_R0024 - 23S ribosomal RNA (RefSeq), at 1,104,788 to 1,107,713
_R0024
DvMF_R0025: DvMF_R0025 - tRNA-Ala (RefSeq), at 1,107,882 to 1,107,957
_R0025
DvMF_R0026: DvMF_R0026 - tRNA-Ile (RefSeq), at 1,107,991 to 1,108,067
_R0026
DvMF_R0027: DvMF_R0027 - 16S ribosomal RNA (RefSeq), at 1,108,180 to 1,109,715
_R0027
Position (kb)
1104
1105
1106
1107
1108 Strain fitness (log2 ratio)
-1
0
1 at 1103.879 kb on - strand, within DvMF_0917 at 1103.977 kb on - strand, within DvMF_0917 at 1103.979 kb on - strand, within DvMF_0917 at 1104.328 kb on + strand at 1104.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 % remove 1,103,879 - DvMF_0917 0.84 -0.7 1,103,977 - DvMF_0917 0.90 -0.7 1,103,979 - DvMF_0917 0.90 +0.5 1,104,328 + -0.5 1,104,389 - -0.2
Or see this region's nucleotide sequence