Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0787

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0786 and DvMF_0787 are separated by 230 nucleotidesDvMF_0787 and DvMF_0788 are separated by 341 nucleotides DvMF_0786: DvMF_0786 - flagellin domain protein (RefSeq), at 943,451 to 944,338 _0786 DvMF_0787: DvMF_0787 - (p)ppGpp synthetase I, SpoT/RelA (RefSeq), at 944,569 to 946,737 _0787 DvMF_0788: DvMF_0788 - extracellular solute-binding protein family 5 (RefSeq), at 947,079 to 948,809 _0788 Position (kb) 944 945 946 947Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 943.948 kb on - strand, within DvMF_0786at 943.948 kb on - strand, within DvMF_0786at 943.948 kb on - strand, within DvMF_0786at 944.060 kb on + strand, within DvMF_0786at 944.069 kb on + strand, within DvMF_0786at 944.140 kb on - strand, within DvMF_0786at 944.140 kb on - strand, within DvMF_0786at 944.193 kb on - strand, within DvMF_0786at 944.194 kb on - strand, within DvMF_0786at 944.293 kb on + strandat 944.360 kb on - strandat 944.535 kb on - strandat 945.416 kb on - strand, within DvMF_0787at 945.416 kb on - strand, within DvMF_0787at 945.510 kb on - strand, within DvMF_0787at 945.571 kb on + strand, within DvMF_0787at 945.594 kb on + strand, within DvMF_0787at 945.834 kb on - strand, within DvMF_0787at 945.868 kb on - strand, within DvMF_0787at 945.881 kb on + strand, within DvMF_0787at 946.399 kb on - strand, within DvMF_0787at 946.530 kb on + strandat 946.584 kb on + strandat 946.621 kb on - strandat 947.009 kb on + strandat 947.084 kb on - strandat 947.108 kb on - strandat 947.394 kb on - strand, within DvMF_0788at 947.667 kb on - strand, within DvMF_0788

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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943,948 - DvMF_0786 0.56 -0.7
943,948 - DvMF_0786 0.56 +0.8
943,948 - DvMF_0786 0.56 +0.2
944,060 + DvMF_0786 0.69 -0.7
944,069 + DvMF_0786 0.70 -0.3
944,140 - DvMF_0786 0.78 -0.7
944,140 - DvMF_0786 0.78 -0.1
944,193 - DvMF_0786 0.84 +0.0
944,194 - DvMF_0786 0.84 -0.6
944,293 + +0.3
944,360 - -0.5
944,535 - -0.8
945,416 - DvMF_0787 0.39 +0.8
945,416 - DvMF_0787 0.39 +0.8
945,510 - DvMF_0787 0.43 -1.2
945,571 + DvMF_0787 0.46 -1.6
945,594 + DvMF_0787 0.47 +0.8
945,834 - DvMF_0787 0.58 -0.2
945,868 - DvMF_0787 0.60 -1.2
945,881 + DvMF_0787 0.60 +0.8
946,399 - DvMF_0787 0.84 -1.6
946,530 + +0.8
946,584 + -1.5
946,621 - -4.0
947,009 + +0.2
947,084 - -0.1
947,108 - -0.2
947,394 - DvMF_0788 0.18 -0.7
947,667 - DvMF_0788 0.34 -0.6

Or see this region's nucleotide sequence