Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0767

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0766 and DvMF_0767 are separated by 212 nucleotidesDvMF_0767 and DvMF_0768 are separated by 226 nucleotides DvMF_0766: DvMF_0766 - 2-nitropropane dioxygenase NPD (RefSeq), at 918,900 to 920,021 _0766 DvMF_0767: DvMF_0767 - integrase family protein (RefSeq), at 920,234 to 921,349 _0767 DvMF_0768: DvMF_0768 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 921,576 to 922,637 _0768 Position (kb) 920 921 922Strain fitness (log2 ratio) -2 -1 0 1at 920.197 kb on - strandat 920.275 kb on - strandat 920.604 kb on + strand, within DvMF_0767at 920.981 kb on - strand, within DvMF_0767at 921.453 kb on - strandat 921.649 kb on - strandat 921.707 kb on - strand, within DvMF_0768at 921.746 kb on - strand, within DvMF_0768at 922.034 kb on - strand, within DvMF_0768at 922.291 kb on - strand, within DvMF_0768

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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920,197 - -0.7
920,275 - -0.3
920,604 + DvMF_0767 0.33 -2.0
920,981 - DvMF_0767 0.67 -2.0
921,453 - -1.1
921,649 - -0.4
921,707 - DvMF_0768 0.12 +0.8
921,746 - DvMF_0768 0.16 +0.4
922,034 - DvMF_0768 0.43 -0.8
922,291 - DvMF_0768 0.67 -0.5

Or see this region's nucleotide sequence