Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0650

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0648 and DvMF_0649 are separated by 14 nucleotidesDvMF_0649 and DvMF_0650 are separated by 484 nucleotidesDvMF_0650 and DvMF_0651 are separated by 487 nucleotides DvMF_0648: DvMF_0648 - formate dehydrogenase accessory protein (RefSeq), at 780,508 to 781,473 _0648 DvMF_0649: DvMF_0649 - cytochrome c class III (RefSeq), at 781,488 to 781,919 _0649 DvMF_0650: DvMF_0650 - putative transcriptional regulator, ModE family (RefSeq), at 782,404 to 782,814 _0650 DvMF_0651: DvMF_0651 - hypothetical protein (RefSeq), at 783,302 to 784,576 _0651 Position (kb) 782 783Strain fitness (log2 ratio) -2 -1 0 1at 781.472 kb on + strandat 781.588 kb on + strand, within DvMF_0649at 781.841 kb on - strand, within DvMF_0649at 782.303 kb on - strandat 782.336 kb on - strandat 782.336 kb on - strandat 782.397 kb on - strandat 782.505 kb on + strand, within DvMF_0650at 782.579 kb on - strand, within DvMF_0650at 782.621 kb on + strand, within DvMF_0650at 782.645 kb on - strand, within DvMF_0650at 783.088 kb on - strandat 783.349 kb on - strandat 783.383 kb on - strandat 783.390 kb on - strandat 783.524 kb on + strand, within DvMF_0651at 783.599 kb on - strand, within DvMF_0651at 783.731 kb on - strand, within DvMF_0651

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
remove
781,472 + -0.5
781,588 + DvMF_0649 0.23 -0.1
781,841 - DvMF_0649 0.82 -0.5
782,303 - -0.5
782,336 - -0.4
782,336 - -1.7
782,397 - -1.1
782,505 + DvMF_0650 0.25 -1.1
782,579 - DvMF_0650 0.43 -1.2
782,621 + DvMF_0650 0.53 -1.4
782,645 - DvMF_0650 0.59 -1.7
783,088 - -1.5
783,349 - -1.0
783,383 - -2.2
783,390 - -1.2
783,524 + DvMF_0651 0.17 -0.7
783,599 - DvMF_0651 0.23 +0.2
783,731 - DvMF_0651 0.34 -0.7

Or see this region's nucleotide sequence