Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0542

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsecD and DvMF_0542 are separated by 125 nucleotidesDvMF_0542 and DvMF_0543 are separated by 224 nucleotides DvMF_0541: secD - preprotein translocase subunit SecD (RefSeq), at 636,283 to 637,881 secD DvMF_0542: DvMF_0542 - preprotein translocase, YajC subunit (RefSeq), at 638,007 to 638,408 _0542 DvMF_0543: DvMF_0543 - sodium/hydrogen exchanger (RefSeq), at 638,633 to 640,528 _0543 Position (kb) 638 639Strain fitness (log2 ratio) -1 0 1at 638.167 kb on + strand, within DvMF_0542at 638.220 kb on - strand, within DvMF_0542at 638.522 kb on + strandat 638.553 kb on - strandat 638.675 kb on - strandat 638.755 kb on + strandat 639.086 kb on + strand, within DvMF_0543at 639.126 kb on + strand, within DvMF_0543at 639.131 kb on + strand, within DvMF_0543at 639.182 kb on - strand, within DvMF_0543

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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638,167 + DvMF_0542 0.40 -1.2
638,220 - DvMF_0542 0.53 -1.7
638,522 + -0.5
638,553 - -0.5
638,675 - -0.1
638,755 + -0.4
639,086 + DvMF_0543 0.24 -1.0
639,126 + DvMF_0543 0.26 -0.2
639,131 + DvMF_0543 0.26 -0.4
639,182 - DvMF_0543 0.29 -0.6

Or see this region's nucleotide sequence