Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0387

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0386 and DvMF_R0019 are separated by 430 nucleotidesDvMF_R0019 and DvMF_0387 are separated by 204 nucleotidesDvMF_0387 and DvMF_0388 are separated by 660 nucleotides DvMF_0386: DvMF_0386 - hypothetical protein (RefSeq), at 453,068 to 453,691 _0386 DvMF_R0019: DvMF_R0019 - no description, at 454,122 to 454,473 _R0019 DvMF_0387: DvMF_0387 - extracellular solute-binding protein family 3 (RefSeq), at 454,678 to 455,457 _0387 DvMF_0388: DvMF_0388 - hypothetical protein (RefSeq), at 456,118 to 456,942 _0388 Position (kb) 454 455 456Strain fitness (log2 ratio) -1 0 1at 453.828 kb on - strandat 453.931 kb on + strandat 454.040 kb on + strandat 455.027 kb on - strand, within DvMF_0387at 455.985 kb on - strandat 456.130 kb on - strandat 456.151 kb on + strandat 456.234 kb on + strand, within DvMF_0388at 456.253 kb on + strand, within DvMF_0388at 456.269 kb on + strand, within DvMF_0388

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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453,828 - -0.3
453,931 + -0.2
454,040 + -0.4
455,027 - DvMF_0387 0.45 -1.2
455,985 - +0.6
456,130 - -0.3
456,151 + -0.3
456,234 + DvMF_0388 0.14 -0.4
456,253 + DvMF_0388 0.16 -0.4
456,269 + DvMF_0388 0.18 -0.2

Or see this region's nucleotide sequence