Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0212 and DvMF_0213 are separated by 433 nucleotides DvMF_0213 and DvMF_0214 overlap by 4 nucleotides DvMF_0214 and DvMF_0215 are separated by 29 nucleotides
DvMF_0212: DvMF_0212 - hypothetical protein (RefSeq), at 235,664 to 239,317
_0212
DvMF_0213: DvMF_0213 - multi-sensor signal transduction histidine kinase (RefSeq), at 239,751 to 241,919
_0213
DvMF_0214: DvMF_0214 - no description, at 241,916 to 241,990
_0214
DvMF_0215: DvMF_0215 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 242,020 to 243,606
_0215
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 238.760 kb on + strand, within DvMF_0212 at 238.908 kb on + strand, within DvMF_0212 at 238.926 kb on - strand, within DvMF_0212 at 239.034 kb on - strand at 239.039 kb on - strand at 239.777 kb on + strand at 239.884 kb on + strand at 239.970 kb on - strand, within DvMF_0213 at 240.099 kb on + strand, within DvMF_0213 at 240.243 kb on - strand, within DvMF_0213 at 240.263 kb on - strand, within DvMF_0213 at 240.309 kb on - strand, within DvMF_0213 at 240.435 kb on - strand, within DvMF_0213 at 240.482 kb on + strand, within DvMF_0213 at 240.608 kb on + strand, within DvMF_0213 at 240.666 kb on - strand, within DvMF_0213 at 241.087 kb on + strand, within DvMF_0213 at 241.135 kb on + strand, within DvMF_0213 at 241.218 kb on - strand, within DvMF_0213 at 241.296 kb on + strand, within DvMF_0213 at 241.304 kb on - strand, within DvMF_0213 at 241.304 kb on - strand, within DvMF_0213 at 241.350 kb on - strand, within DvMF_0213 at 241.666 kb on + strand, within DvMF_0213 at 241.673 kb on - strand, within DvMF_0213 at 241.745 kb on + strand at 242.151 kb on - strand at 242.229 kb on + strand, within DvMF_0215 at 242.488 kb on - strand, within DvMF_0215 at 242.523 kb on - strand, within DvMF_0215 at 242.620 kb on + strand, within DvMF_0215 at 242.623 kb on - strand, within DvMF_0215 at 242.623 kb on - strand, within DvMF_0215 at 242.661 kb on + strand, within DvMF_0215 at 242.676 kb on + strand, within DvMF_0215 at 242.706 kb on + strand, within DvMF_0215 at 242.791 kb on + strand, within DvMF_0215 at 242.797 kb on - strand, within DvMF_0215
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 % remove 238,760 + DvMF_0212 0.85 -0.8 238,908 + DvMF_0212 0.89 -0.5 238,926 - DvMF_0212 0.89 -0.7 239,034 - -0.1 239,039 - -0.6 239,777 + -0.5 239,884 + -0.4 239,970 - DvMF_0213 0.10 -3.0 240,099 + DvMF_0213 0.16 +0.7 240,243 - DvMF_0213 0.23 -0.9 240,263 - DvMF_0213 0.24 -1.6 240,309 - DvMF_0213 0.26 -1.8 240,435 - DvMF_0213 0.32 -0.3 240,482 + DvMF_0213 0.34 -0.2 240,608 + DvMF_0213 0.40 +0.2 240,666 - DvMF_0213 0.42 +0.3 241,087 + DvMF_0213 0.62 +0.4 241,135 + DvMF_0213 0.64 -3.4 241,218 - DvMF_0213 0.68 -2.3 241,296 + DvMF_0213 0.71 -1.9 241,304 - DvMF_0213 0.72 -3.3 241,304 - DvMF_0213 0.72 -3.8 241,350 - DvMF_0213 0.74 -1.8 241,666 + DvMF_0213 0.88 -1.0 241,673 - DvMF_0213 0.89 -1.8 241,745 + +0.4 242,151 - -2.8 242,229 + DvMF_0215 0.13 -1.0 242,488 - DvMF_0215 0.29 -4.1 242,523 - DvMF_0215 0.32 -3.2 242,620 + DvMF_0215 0.38 -3.0 242,623 - DvMF_0215 0.38 -1.3 242,623 - DvMF_0215 0.38 -2.8 242,661 + DvMF_0215 0.40 -3.3 242,676 + DvMF_0215 0.41 -3.4 242,706 + DvMF_0215 0.43 -3.3 242,791 + DvMF_0215 0.49 -3.0 242,797 - DvMF_0215 0.49 -2.8
Or see this region's nucleotide sequence